pyproject.toml

[build-system]
requires = ["setuptools", "setuptools-scm"]
build-backend = "setuptools.build_meta"

[project]
name = "pysindy"
description = "Sparse Identification of Nonlinear Dynamics"
authors = [
    {name="Brian de Silva", email="bdesilva@uw.edu"},
    {name="Kathleen Champion", email="kpchamp@uw.edu"},
    {name="Markus Quade", email="info@markusqua.de"},
    {name="Alan Kaptanoglu", email="akaptano@uw.edu"}
]
license = {text = "MIT"}
requires-python = ">=3.8"
dynamic = ["version"]
classifiers = [
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Topic :: Scientific/Engineering :: Mathematics",
]
readme = "README.rst"
dependencies = [
    "jax>=0.4,<0.5",
    "scikit-learn>=1.1, !=1.5.0",
    "derivative>=0.6.2",
    "typing_extensions",
]

[project.optional-dependencies]
dev = [
    "matplotlib",
    "seaborn",
    "pytest>=6.2.4, <8.0.0",
    "black",
    "build",
    "pytest-cov",
    "pytest-lazy-fixture",
    "flake8-builtins-unleashed",
    "jupyter",
    "jupytext",
    "pre-commit",
    "hypothesis",
    "jupyter-contrib-nbextensions"
]
docs = [
    "ipython",
    "pandoc",
    "sphinx-rtd-theme",
    "sphinx==7.1.2",
    "sphinxcontrib-apidoc",
    "nbsphinx"
]
miosr = [
    "gurobipy>=9.5.1,!=10.0.0"
]
cvxpy = [
    "cvxpy<1.5",
    "scs>=2.1, !=2.1.4"
]
sbr = [
    "numpyro",
    "arviz==0.17.1",
    "scipy<1.13.0"
]

[tool.black]
line-length = 88
force-exclude = '''
    \.git
    \.mypy_cache
    \.venv
    .vscode
    version.py
    build
    dist
    env
'''

[tool.pytest.ini_options]
filterwarnings = [
  "ignore::RuntimeWarning",]
addopts = '-m "not slow and not notebooks"'
markers = ["slow", "notebooks"]

[tool.codespell]
ignore-words-list = "pres,nd,hist"

[tool.setuptools]
packages = ["pysindy"]

[tool.setuptools_scm]
write_to = "pysindy/version.py"

[tool.autopep8]
ignore = ["E731"]