README.Rmd

---
output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r setup1, include=FALSE}
knitr::opts_chunk$set(fig.path=".readme_files/", warning=FALSE, message=FALSE, error=FALSE, echo = TRUE)
```


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[![R-CMD-check](https://github.com/dynverse/dynfeature/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/dynverse/dynfeature/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/dynverse/dynfeature/branch/master/graph/badge.svg)](https://app.codecov.io/gh/dynverse/dynfeature?branch=master)
[**Tutorials**](https://dynverse.org)
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# Calculating differentially expressed features across a trajectory

Included are methods to

* Calculate the overall feature importance, using `calculate_overall_feature_importance`
* Calculate the importance of a feature at a bifurcation point, using `calculate_milestone_feature_importance`

The plotting of the top features is nicely intergrated into [dynplot](https://github.com/dynverse/dynplot)

[![dynplot heatmap](https://raw.githubusercontent.com/dynverse/dynplot/devel/.readme_files/heatmap-1.png)](https://github.com/dynverse/dynplot)

## Latest changes

Check out `news(package = "dynwrap")` or [NEWS.md](NEWS.md) for a full list of changes.

<!-- This section gets automatically generated from NEWS.md -->

```{r news, echo=FALSE, results="asis"}
cat(dynutils::recent_news())
```

## Dynverse dependencies

<!-- Generated by "update_dependency_graphs.R" in the main dynverse repo -->
![](man/figures/dependencies.png)