-
Notifications
You must be signed in to change notification settings - Fork 285
/
RELEASE_NOTES
2718 lines (2391 loc) · 165 KB
/
RELEASE_NOTES
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
This file contains a description of the major changes to the easybuild-easyblocks EasyBuild package.
For more detailed information, please see the git log.
These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html.
The latest version of easybuild-easyblocks provides 259 software-specific easyblocks and 43 generic easyblocks.
v4.9.4 (22 September 2024)
--------------------------
update/bugfix release
- various enhancements, including:
- allow Python bundles and packages to specify a maximum Python version for the system toolchain (#3431)
- copy EasyConfig instance in constructor of Bundle and Cargo easyblocks before making changes to it (#3448)
- fix crash in GCC easyblock when cuda-compute-capabilities EasyBuild configuration option is not set (#3449)
- various bug fixes, including:
- ignore Python from virtualenvs in GROMACS configure via -DPython3_FIND_VIRTUALENV=STANDARD (#3283)
- enhance custom easyblock for NCCL: add licence to NCCL installation (#3451)
v4.9.3 (14 September 2024)
--------------------------
update/bugfix release
- minor updates, including:
- update custom easyblock for Tensorflow for versions 2.14 + 2.15 (#3303)
- add support for versions >= 2024a to MCR easyblock (#3369)
- update custom easyblock for Bazel for versions >= 7.0 (#3370)
- don't consider lib/release for impi >= 2021.11 (#3375)
- update ORCA easyblock for version 6 (#3395)
- update custom easyblock for psmpi to support the renaming of a couple of options in 5.10.0-1 (#3420)
- update sanity check in OpenFOAM easyblock, since there's no `modifyMesh` in OpenFOAM 12 (#3434)
- fix sanity check for Geant4 >= v11.2 (#3439)
- minor enhancements, including:
- enhance psmpi easyblock to activate CUDA support when it is a dependency + make check for static libs in MPICH easyblock optional (#2787)
- make a project environment and manage LOAD_PATH for JuliaPackage (#3239)
- set build type for PyTorch explicitely (#3332)
- add `sanity_check_test_inputs` custom easyconfig parameter, mapping for zen4, and support building of non-stable versions to LAMMPS easyblock (#3336)
- add RISCV64 support and update config options of new versions of Extrae (#3339)
- set `$ESMFMKFILE` environment variable in environment module for ESMF (#3368)
- use build dir for big files/folders while building TensorFlow (#3371)
- update `PythonPackage` easyblock to allow installation of Python packages with `$PIP_REQUIRE_VIRTUALENV` set + move temporary pip folder into build dir (#3374)
- add RISC-V support to Boost easyblock (#3376)
- add support for generating `.gem` files from `.gemspec` files and support for `preinstallopts` in the `RubyGem` easyblock (#3381)
- simplify install step in custom easyblock for `Tkinter` (#3382)
- add MSA and specially PMIx support for ParaStationMPI (#3383)
- update custom easyblock for PETSc to consider `include/suitesparse` subdirectory for SuiteSparse headers (#3391)
- enhance custom easyblock for GCC to use `with-arch` option for nvptx with 13.1+ (#3396)
- support revisions in crates extraction of cargo packages (#3405)
- set `$R_LIBS_USER` in `RPackage` easyblock to avoid picking up on R packages installed in home directory (#3407)
- update custom easyblock for QuantumESPRESSO to be aware of MPI tests being disabled in EasyBuild configuration (#3412)
- disable the version check of pip in Python packages by defining `$PIP_DISABLE_PIP_VERSION_CHECK` (#3427)
- make sure user packages are not used in sanity check of PythonBundle (#3435)
- enhance OpenFOAM easyblock to also build the plugins for OpenFOAM >= v2406 (#3436)
- enhance binutils easyblock to explicitely pass msgpack configure option (#3438)
- various bug fixes, including:
- patch `ctypes` for Python installations when filtering `LD_LIBRARY_PATH` + fix path to `ldconfig` when using alternate sysroot (#3352)
- also consider 'normalised' package name with underscore rather than dash in EasyBuild easyblock (#3358)
- use PRRTE MCA environment variable for oversubscription in OpenMPI easyblock (#3360)
- fix import of `parse` in `openssl_wrapper.py` for Python 2.7 (#3364)
- make sure that OpenFOAM's wmake can find MPFR and GMP if CGAL >= 5.0 (header-only) is used (#3366)
- remove dummy license server info from ANSYS (#3377)
- explicitly call `csh` in custom easyblock for WPS (#3384)
- use relative paths to object files when compiling shared libraries in the OpenFOAM easyblock (#3388)
- change extra `$PATH` entry for OCaml to use `opam/default` rather than `opam/system` (#3390)
- force `--without-unwind` for ARM and add `--with-libz` option for all architectures in custom easyblock for Extrae (#3393)
- fix `--sanity-check-only` for impi (#3403)
- fix crash in Cargo easyblock when no crates are specified (#3404)
- fix double initialization of `Cargo` by `CargoPythonPackage` by removing incorrect custom `__init__` implementation + fix use of `super()` in PALM easyblock (since that doesn't work with Python 2.7) (#3406)
- fix typo in log message in `PythonPackage` easyblock (#3408)
- make sure to raise an error if `pick_python_cmd` returns `False` for Python bundles/packages (#3430)
- don't wipe build environment before building opam in install step of OCaml easyblock (#3443)
- other changes:
- merge of the `ConfigureMake` and `CMakeMake` versions of the easyblock for QuantumESPRESSO (#3338)
- remove redundant backslashes in GEANT easyblock (#3394)
v4.9.2 (12 June 2024)
---------------------
update/bugfix release
- 4 new software-specific easyblocks: QuantumESPRESSO with CMake (#3257), AEDT (#3281), optiSLang (#3300), MetalWalls (#3311, #3331)
- minor enhancements and updates, including:
- refactor GAMESS-US easyblock to directly write install.info (#3047)
- add ABAQUS license server to generated module (#3277)
- allow 'nosource: True' in PythonPackage extensions (#3305)
- auto-disable FFTW quad precision on RISC-V (#3314)
- use regular 'configure' instead of wrapper script in easyblock for UCX plugins (#3315)
- add libjpeg-turbo to include dir for torchvision easyblock (#3322, #3353)
- add RISC-V support to custom easyblocks for Clang (#3325), Java (#3323), Mesa (#3324)
- add a sanity check for OpenFOAM's 'wmake' to make sure it finds the compiler commands (#3328)
- always override the compiler version check for CUDA installations (#3329)
- allow version mismatchs between OpenSSL components in host system as long as they fulfill version requirements (#3340)
- allow external PRRTE in OpenMPI easyblock (#3347)
- various bug fixes, including:
- don't manipulate setup.py for Python 3.12+ when using alternate sysroot (#3313)
- do not run unit tests on Python 3.5 (#3326)
- avoid sanity check on the software itself for CargoPythonBundle easyblock (#3341)
- fix malformed '$CPATH' for intel-compilers on Debian/Ubuntu (#3346)
- other changes:
- Binary easyblock already adds top level directory to PATH, so no need to do it in the Stata easyblock (#3307)
v4.9.1 (5 April 2024)
---------------------
update/bugfix release
- 1 new software-specific easyblock: DualSPHysics (#3050)
- minor enhancements and updates, including:
- use proxy in sanity check of custom easyblock to install OpenSSL wrapper (#2922)
- update Clang-AOMP easyblock for ROCm 5.6 (#2958)
- consider both `$EBROOTGCC` and `$EBROOTGCCCORE` in Clang-AOMP easyblock to specify `-DGCC_INSTALL_PREFIX` (#2958)
- update WIEN2k easyblock for v23.2 (#3035)
- enhance LAMMPS easyblock dynamically add `ARMV81` and `A64FX` to Kokkos CPU mapping based on LAMMPS version (#3036)
- add `pip_verbose` option to PythonPackage and set it to True in PyTorch easyblock, to show build output when using pip (#3065)
- also support OpenSSL 3 in OpenSSL wrapper easyblock (#3081)
- improve error checking in PyTorch easyblock (#3085)
- update MCR easyblock for compatibility with versions >= R2022b (#3119)
- add `species` easyconfig parameter to VEP easyblock (#3121)
- only install Gurobi Python bindings via `setup.py` for Gurobi v10.x and older (#3225)
- consistently honor `pretestopts` & `testopts` in `PerlModule` (#3231)
- fix OCaml easyblock for recent versions (#3235)
- improve QuantumESPRESSO easyblock by cleaning up and extending configure step + running test suite (#3241, #3258)
- allow overriding `testinstall` in PyTorch easyconfigs (#3250)
- enhance GCC easyblock to set `$LIBRARY_PATH` and disable building of NVPTX offload support on RISC-V systems (#3256)
- add support for conda provided by Miniforge (#3260)
- set `$GOPATH` in configure step of `GoPackage` easyblock to avoid polluting `$HOME/go` (#3262)
- various bug fixes, including:
- set `$BGW_TEST_MPI_NPROCS` in BerkeleyGW test step (#2950)
- fix installation of Python bindings for LAMMPS >= 2Aug2023 + fix sanity check by doing MPI_Finalize (#3036)
- fix ELPA preprocessor flag for QuantumESPRESSO >= 7 (#3063)
- fix link order in PETSc easyblock for SCOTCH >= 7.x (#3069)
- update PyTorch easyblock to avoid configure warnings by disabling some options (#3070)
- pick Tcl/Tk lib directory correctly in R easyblock, may be either `lib` or `lib64` (#3072)
- use `(=|:=)` in regex because OpenFOAM rule files use `:=` instead of `=` since v2212 (#3073)
- add Clang `opt` binary to RPATH wrapper dir (#3076)
- improve `generate_crate_list` + parsing of crates in `Cargo` easyblock (#3084)
- remove trailing slash in `PETSC_DIR` set by custom easyblock for PETSc (#3086)
- use correct TCL configure options for Python 3.11+ (#3087)
- tweak `CMakeMake` easyblock to apply CMake policy to select `python` based on `$PATH` order, instead of highest version (#3088)
- update `Cargo` easyblock to extract crates into a vendor subdir and overwrite git repo URLs with local paths (#3118)
- only add `--with-ucc` for OpenMPI 4.1.4+ (#3223)
- remove trailing slash in `SLEPC_DIR` in configure step of custom easyblock for SLEPc (#3229)
- fix OpenFOAM easyblock to fix `motorBike` example in sanity check for versions >=11 (#3232)
- only run CUDA sanity check command for torchvision if GPU is present (#3236)
- ensure localrc is created in the correct subdir for NVHPC v22.9+ (#3240)
- remove wrong configure option for LibInt 2.6.x (#3249)
- do not rename GCC's include-fixed directory by default + add script to regenerate it (#3254)
- other changes:
- update copyright lines to 2024 (#3268)
v4.9.0 (30 December 2023)
-------------------------
feature release
- add generic `CargoPythonBundle` easyblock (#2964)
- 3 new software-specific easyblocks: flook (#3034), HPCC (#3009), PALM (#3020)
- minor enhancements and updates, including:
- add custom easyconfig parameter `cmake_options` to SuiteSparse easyblock (#3031)
- update custom intel-compilers easyblock for versions >= 2024 (#3037)
- update custom easyblock for Intel MPI easyblock for v2021.11 (#3039)
- update numpy easyblock for v1.26+ (#3041)
- update custom easyblock for Intel MKL for v2024.x (#3042)
- update Ferret easyblock to be compatible with v7.6.0 (#3052)
- various bug fixes, including:
- add support for allowing version mismatch + consider versionsuffix when creating `.modulerc` in `ModuleRC` easyblock (#3028)
- update error detection for PyTorch tests (#3033)
- disable LLVM build downloads from CI in Rust (#3038)
- add requirement for EULA acceptance to CUDA easyblock (#3045)
- make various fixes and enhancements to NWChem easyblock (#3049)
- add binutils symlinks when building TensorFlow with `--rpath` (#3054, #3058)
- fix specifying path to SuiteSparse header files and libraries in numpy, Trilinos, PETSc easyblocks (#3056)
- fix `det_pylibdir` provided by `PythonPackage` easyblock for Python 3.12+ (#3057)
- fix nvptx sanity check for Clang >= 14.x (#3059)
- other changes:
- update SuiteSparse easyblock to only install SuiteSparse libraries with `make install` (#3004)
- also consider `$EB_COMSOL_LICENSE_FILE` environment variable in custom easyblock for COMSOL (#3044)
- import `LooseVersion` from `easybuild.tools` instead of `distutils.version` in easyblocks (#3048)
v4.8.2 (29 October 2023)
------------------------
update/bugfix release
- minor enhancements and updates, including:
- allow use of `test_cmd` without `runtest` for `ConfigureMake` (#2837)
- enhance `CMakeMake` easyblock to run `ctest` command if `runtest` is `True` (#2838)
- enhance `Conda` easyblock: add support for using custom `conda` command (like `mamba`), and clean up after installation (#2996)
- update WRF easyblock to correctly determine `WRF*` subdirectory for WRF versions >= 4.5.1 (#2997)
- update numpy easyblock to be able to use FlexiBLAS with MKL as dependency (#2999)
- add error regexp for PyTorch tests run in subprocess and enhance error message (#3003, #3005)
- don't blindly overwrite `-Dccflags` + honour `preconfigopts` in Perl easyblock (#3010)
- use more test programs in sanity check step of OpenMPI easyblock (#3016)
- fix `CMAKE_PREFIX_PATH` in imkl easyblock (#3021)
- update sanity check in wxPython easyblock for version 4.2.0 (#3023)
- various bug fixes, including:
- fix creation of symlink for libraries in TBB easyblock (#2927)
- fix `--sanity-check-only` and `--module-only` for UCX plugins (#3007)
- replace umlaut in docstring of PerlBundle easyblock (to fix Non-ASCII character error when using Python 2.7) (#3008)
- enhance TensorFlow easyblock to avoid use of `-mcpu=native` for XNNPACK component when building on aarch64 (#3011)
- only use `-DCMAKE_SKIP_RPATH=ON` for CMake < 3.5.0 (#3012)
- fix the blas/lapack name passed to meson when building recent scipy versions (>= 1.9.0) on top of Intel MKL (#3024)
v4.8.1 (11 September 2023)
--------------------------
update/bugfix release
- new custom easyblock for sympy (#2949) and tensorflow-compression (#2990)
- minor enhancements and updates, including:
- drop unnecessary CUDA stub libraries from $LIBRARY_PATH (#2793)
- update Score-P easyblock to use `--with-nocross-compiler-suite=nvhpc` for recent software versions (#2928)
- unset `$CPPFLAGS`, `$LDFLAGS`, `$LIB` which may interfere with Score-P configure magic (#2928)
- update Clang easyblock for versions >= 16 + run tests only for final stage of bootstrap build (#2929)
- handle new directory structure for Intel Advisor (#2942)
- use `DCPU_BASELINE=DETECT` for OpenCV when default optarch compiler option is used (#2954)
- update MXNet easyblock + don't try to install R extension by default for MXNet >= 1.0 (#2955)
- use checkMCR.sh to determine if we have the correct MCR for FreeSurfer (#2962)
- add options to `MesonNinja` easyblock to customize `build_cmd`, `install_cmd`, `builddir` (#2963, #2993)
- add support for building CP2K with libvori support (#2967)
- enable system `pybind11` for PyTorch 1.10+ to make sure `pybind11` provided as dependency is used (#2968)
- update LLVM easyblock for LLVM v16: symlink `third-party` to `third-party-<version>.src` (#2970, #2994)
- update scipy easyblock for scipy >= 1.11.0 (#2971, #2980)
- update sanity check for Mesa >= 22.3 (#2973)
- update sanity check for OpenFOAM 11 (#2978)
- add support to `PerlModule` easyblock to customize prefix option used in installation command (#2979)
- update TensorFlow easyblock for v2.13 since LMDB is no longer a dependency (#2982)
- enhance PyTorch easyblock to print individual failed tests (#2983)
- enhance PETSc easyblock to support using custom `$PETSC_ARCH` (#2987)
- various bug fixes, including:
- correctly determine path to active binutils in TensorFlow easyblock (#2218)
- patch Java binaries/libraries when using alternate sysroot to ensure correct glibc & co are picked up + add custom sanity check (#2557, #2995)
- update OpenMPI easyblock to fix sanity check for Clang-based compilers (#2774)
- improve depot management in `JuliaPackage` easyblock (#2935)
- disable disk space check in STAR-CCM+ installer (#2956)
- fix type check for `optarch` value in `Cargo` easyblock (#2969)
- conditionally add `-Wno-unused-command-line-argument` to `$CFLAGS` to fix error when installing `imkl-FFTW` with RPATH (#2975)
- enhance PythonPackage easyblock to deal with `posix_local` installation scheme used by Python in recent Debian/Ubuntu versions (#2977, #2988)
- don't add MATLAB libraries to `$LD_LIBRARY_PATH` (#2981)
- enhance Mesa easyblock to append EGL vendor library directory path to `$__EGL_VENDOR_LIBRARY_DIRS` (#2985)
- fix typo in TensorFlow easyblock when finding libdir of OpenSSL (#2989)
v4.8.0 (7 July 2023)
--------------------
feature release
- add `PerlBundle` generic easyblock for installing a bundle of Perl modules (#2945)
- add custom easyblock for Rust, which makes sure that all shared libraries use RPATH rather than RUNPATH if --rpath is used (#2952)
- minor enhancements and updates, including:
- add support for NVIDIA Hopper CC 9.0 in LAMMPS (#2941)
- add support for `install_cmds` in `Binary` easyblock (#2953)
- various bug fixes, including:
- patch CMake's UnixPaths.cmake script if --sysroot is set (#2248)
- fix incorrect sanity_check_step for torchvision (#2938)
- update OpenBLAS easyblock since make shared is necessary and sufficient with OpenBLAS 0.3.23 + recent parallel build fixes (#2944)
- improve handling of `optarch` in `Cargo` easyblock (#2947)
- reset modules loaded by PythonPackage to let ExtensionEasyBlock handle `multi_deps` correctly (#2951)
- other changes:
- stop running tests with Python 2.7 since it is no longer supported in GitHub Actions (#2943)
v4.7.2 (27 May 2023)
--------------------
- new generic easyblock for installing Rust crates with cargo: Cargo and CargoPythonPackage (#2902, #2934)
- minor enhancements and updates, including:
- let MATLAB easyblock raise an error if the MATLAB installation key is not provided (#2905)
- print message to inform that GPU package (instead of Kokkos) is used for LAMMPS (#2906)
- enhance PyTorch easyblock to use FlexiBLAS for PyTorch >= 1.11.0 (#2915)
- various bug fixes, including:
- use custom RPATH sanity check for Go packages that doesn't actually check for an RPATH section in the binary (#2913)
- use string '0' to avoid problems when openssl version is not determined (#2914)
- update GCC easyblock to ensure that --sysroot is passed to linker (but only when it needs to be) (#2921)
- add output log to MATLAB installs, actually parse for common errors (#2924)
- enhance Gurobi easyblock to allow using $EB_GUROBI_LICENSE_FILE environment variable (#2926)
- force building torchvision with CUDA support if CUDA is included as dependency by setting `$FORCE_CUDA` (#2931)
- fix exec permission on files in arch bindir for COMSOL (#2932)
v4.7.1 (March 20th 2023)
------------------------
update/bugfix release
- minor enhancements and updates, including:
- fix TensorFlow easyblock for new versions of Bazel & TensorFlow (#2854)
- make NAMD easyblock aware of (pre)testopts (#2856)
- update MesonNinja easyblock for Meson >=0.64.0 (#2861)
- update scipy easyblock for scipy >= 1.9.0 to use meson/ninja (#2862, #2903)
- modify logic in QScintilla easyblock to find the PyQt5 sipdir in more places (#2868)
- add `testinstall` custom easyconfig parameter to PythonPackage easyblock (#2872)
- use -x option for "go install" in GoPackage generic easyblock, to print commands as they are executed (#2878)
- allow disabling pybind11 tests with `runtest = False` (#2892)
- call parent post_install_step in EasyBuildMeta easyblock (so postinstallcmds are taken into account) (#2893)
- update and enhance Maple easyblock for recent versions (#2895)
- relax glob pattern to find Mathematica install script (#2896)
- implement CUDA support in the ELPA EasyBlock & fix CPP configure issue on newer ELPA versions (#2898)
- update Trilinos easyblock to allow disabling of building tests and forward deps + support Trilinos v13.x (#2900)
- enhance Python easyblock to create non-versioned symlink for python-config + check for bin/python and bin/python-config in sanity check (#2904)
- various bug fixes, including:
- do not use -g77 option when installing NVHPC 22.9+ (#2819)
- check that sanity_check_module_loaded attribute exists before querying it in PythonPackage easyblock (#2865)
- fix $JULIA_DEPOT_PATH in installation of multiple JuliaPackage extensions (#2869)
- fix checking of CUDA/ROCR-Runtime dependencies for Clang to determine default build targets (#2873)
- show template values of exts_default_options in PythonBundle (#2874)
- fix missing initialization of CMakeMake in CMakePythonPackage (#2876)
- fix error when failing pip version check during PythonPackage sanity check (#2877)
- handle templating correctly in CMakeMake when playing with configopts (#2882)
- avoid crash in test step of PyTorch easyblock if runtest is not a command (#2883)
- fix check configure option in FlexiBLAS easyblock (#2886)
- use older `ncgen -H` for older netCDF (#2889)
- fix linking numexpr with Intel MKL's VML library for imkl >= 2021.x (#2897)
- other changes:
- only give read permissions in GitHub Actions workflows (#2863)
- use start dir of extension to install R packages (#2867)
- fix website/docs links in README (#2870)
- add deprecation notice to RPackage extensions with relative paths in start_dir (#2879)
v4.7.0 (January 9th 2023)
-------------------------
feature release
- add generic easyblocks for installing (bundle of) Julia packages: JuliaPackage (#2816) and JuliaBundle (#2830)
- minor enhancements and updates, including:
- enhance TensorFlow easyblock to take into account provided OpenSSL dependency (#2575)
- add fix_shebang to install_step of PythonPackage easyblock so that we can fix shebangs when installing extensions (#2680)
- update PETSc easyblock for newer versions (>= 3.17) (#2796)
- update Clang easyblock to add support for new directory structure in Clang versions >= 14 + support Flang (#2800)
- update Xmipp easyblock since versions >= 3.20.07 use `noAsk` option to configure (#2809)
- add include/opencv4 to $CPATH for OpenCV versions >= 4.0 (#2818)
- add extra option for disabling LAPACK in ESMF (#2821)
- enable building of static libraries for libxml2 >= 2.10 (#2825)
- update Xmipp easyblock to handle effects of CUDA at SYSTEM level and newer CUDA version requirements for stdc++ (#2831)
- update LLVM easyblock to put 'cmake' symlink in place so separate CMake modules required for LLVM 15+ can be found (#2832)
- set $TEMPDIRPATH for testsuite in the BerkeleyGW easyblock, to avoid polluting /tmp (#2836)
- add `configure_no_prefix` option to skip addition of prefix to configure command in ConfigureMake easyblock (#2842)
- update qscintilla.py to be compatible with EB install of PyQt5 >= 5.15 (#2845)
- add UCC to known_dependencies in OpenMPI EasyBlock (#2847)
- update Clang-AOMP easyblock to handle version 5.2 and newer (#2851)
- various bug fixes, including:
- fix installing of Clang with RPATH linking (#2799)
- fix --module-only for Clang + fix sanity check for Clang 11.x (#2800)
- create $XDG_CACHE_HOME for PyTorch tests (#2806)
- make PythonPackage easyblock compatible with --sanity-check-only by loading module early during sanity check step (#2828)
- fix docstring of PythonBundle generic easyblock (#2833)
- fix counting of failures in PyTorch tests (#2834, #2840)
- make sure that ANSYS INSTALL script has execute permissions (#2852, #2853)
- other changes:
- remove useless -openmp build option for MRtrix v3.x (#2822)
- update HDF5 easyblock to use --enable-threadsafe configure option to make C API thread safe (#2824)
- use new EasyBuild logo in README (#2827)
- automatically cancel Github Action workflow runs for outdated commits (#2835)
- use fixed names for bazel/wrapper subdirectories used when building TensorFlow, to make debugging easier (#2841)
- also run unit tests with Python 3.11 (#2844)
- tweak docstring in some generic easyblocks so it renders nicely in auto-generated documentation (#2849)
- update copyright lines for 2023 (#2850)
v4.6.2 (October 21st 2022)
--------------------------
update/bugfix release
- 2 new software-specific easyblock:
- CUDA compatibility libraries (#2764) and mamba (#2808)
- minor enhancements and updates, including:
- update OpenFOAM easyblock to support OpenFOAM 10 + clean up variant/version checks (#2766)
- added support for ESMPy in ESMF (#2789)
- enhance OpenBLAS easyblock to support running LAPACK test suite + checking how many tests fail (#2801)
- make numexpr easyblock aware of toolchain with GCC + imkl (#2810)
- add sanity check commands for netCDF (#2811)
- various bug fixes, including:
- handle problems copying symlink that points to CUDA folder that is not created for non CUDA builds of SuiteSparse (#2790)
- don't install docs (to avoid trouble with Java) + add Rocky support for ABAQUS (#2792)
- correctly count the number of failing tests (not failing test suites) in PyTorch builds (#2794, #2803)
- fix docstring for PyTorch easyblock (#2795)
- handle iterative builds with MakeCp easyblock (#2798)
- accept both None and empty value for optarch to let OpenCV detect host CPU (#2804)
- enhance EasyBuildMeta easyblock: auto-enable installing with pip + fix setup.py of easyconfigs package so installation with setuptools >= 61.0 works (#2805)
- use `python -m pip` instead of `pip` in PythonPackage easyblock (#2807)
- other changes:
- make the test output from PythonPackage less verbose by disabling default search for error patterns done by run_cmd (2797)
v4.6.1 (September 12th 2022)
----------------------------
update/bugfix release
- minor enhancements and updates, including:
- update LAMMPS easyblock for LAMMPS/23Jun22 (#2213)
- reduce the number of command line options for 'cmake' command in CMakeMake generic easyblock (#2514)
- update libQGLViewer easyblock to take into account changes in the shared library names depending on Qt versions they are compiled with (#2730)
- improve PLUMED detection in GROMACS easyblock (#2749)
- make `$LD_LIBRARY_PATH` detection more robust for LAMMPS (#2765)
- enhance NVHPC easyblock to avoid superfluous warning (#2767)
- enhance PyTorch easyblock to also capture tests failing with signal (#2768)
- enhance PythonPackage easyblock to make sure all test command output makes it to the EasyBuild log, also when return_output_ec=True (#2770)
- set $NVHPC_CUDA_HOME for NVHPC 22.7+ (#2776)
- various bug fixes, including:
- make Amber easyblock aware of FlexiBLAS (#2720)
- update PyTorch easyblock to configure without breakpad support on POWER (#2763)
- use lib* in post_install step of FFTW.MPI easyblock to fix paths not being found on Linux distros favouring lib64 (like Suse/SLES) (#2771)
- use det_cmake_version function to determine CMake version in CMakeMake generic easyblock (#2772)
- don't enable building of ld.gold when installing binutils on a RISC-V system + don't configure GCC to use gold as default linker on a RISC-V system (#2780)
- tweak Amber(Tools) easyblock to run tests from top-level directory (#2781)
- fix version check for NVPTX library in sanity check of Clang easyblock (#2783)
- other changes:
- update CI workflows to use Ubuntu 20.04 (since Ubuntu 18.04 is deprecated) (#2779)
v4.6.0 (July 8th 2022)
----------------------
feature release
- new software-specific easyblock for STAR-CCM+ (#1613)
- minor enhancements and updates, including:
- update Siesta EasyBlock to support GCC 10+ by adding -fallow-argument-mismatch Fortran compiler option (#2690)
- enable building of shared library for Libint 2.7+ (#2738)
- allow some PyTorch tests to fail + print warning if one or more tests fail (#2742)
- also support OpenSSL 3.0 in OpenSSL wrapper easyblock (#2746)
- add more logging to install_pc_files method of OpenSSL wrapper easyblock (#2752)
- make WPS easyblock aware of (pre)buildopts (#2754)
- add Abseil system dependency for TensorFlow 2.9+ (#2757)
- disable altivec when building FFTW versions < 3.4 with single-precision with GCC on POWER (#2758)
- various bug fixes, including:
- make VEP easyblock compatible with --sanity-check-only (#2743)
- update Rosetta easyblock to take into account that $LD_LIBRARY_PATH, $CPATH, $PATH may not be defined (#2744)
- only load temporary module file during sanity check for pybind11 for stand-alone installations, so it can be installed as extension (#2747)
- make sure that CMakeMakeCp uses correct build dir (#2748)
- enhance Bazel easyblock to avoid writing to $HOME in sanity check (#2756)
v4.5.5 (June 8th 2022)
----------------------
update/bugfix release
- new software-specific easyblock for FFTW.MPI (#2724)
- minor enhancements and updates, including:
- update NEURON easyblock to use CMakeMake for recent versions (#2304)
- enhance Clang easyblock to add support for building with AMDGPU offload (#2684, #2729)
- update sanity check in OpenMPI easyblock to support OpenMPI v5.0.0 (#2709)
- don't use gold linker by default for GCC >= 11.3 (#2711)
- update sanity check in R easyblock for versions >= 4.2.0, since S.h is not included anymore (#2713)
- update ABAQUS easyblock for ABAQUS 2022 (#2716)
- update LLVM easyblock for LLVM v14.0.x (#2718)
- update Mesa easyblock to remove swr driver configopts for versions 22+ (#2719)
- enhance Clang easyblock to support also installing Python bindings (#2721, #2725)
- enhance SuperLU easyblock to support building on top of FlexiBLAS and be compatible with SuperLU v5.3 (#2722)
- update TensorFlow easyblock for version 2.8.0 (#2723)
- modify FFTW's sanity check step to allow checking only for MPI parts of FFTW installation (#2724)
- add support to ConfigureMake for tweaking (first part of) test command via 'test_cmd' (#2726, #2737)
- enhance MrBayes easyblock with custom sanity check command (#2727)
- update cudnnarch string templates used to compose source tarball names from cuDNN 8.3.3 onwards (#2728)
- add sanity check command to OpenSSL wrapper easyblock to verify that system certificates are available to OpenSSL (#2735)
- ignore exit code of pkg-config command in OpenSSL wrapper easyblock, since with pkgconf they exit with a non-zero exit code if the OS package is not installed (#2736)
- various bug fixes, including:
- remove system-compiled binutils dirs from $LDFLAGS in binutils easyblock (#2712)
- fix for FreeSurfer easyblock: define $FREESURFER needed by recon_all (#2717)
- also symlink cert.pem in from-source OpenSSL installation (if it exists) (#2735)
v4.5.4 (March 31st 2022)
------------------------
update/bugfix release
- minor enhancements and updates, including:
- update Clang-AOMP easyblock to add support for ROCm v5.0 (#2681)
- enable system SSL certificates in OpenSSL installations (#2683)
- enhance MRtrix easyblock: build in parallel + enable OpenMP support for MRtrix >= 3.0 (#2685)
- avoid dependency on 'which' command in sanity check for Python, use 'command -v' instead (#2687)
- enhance Tarball easyblock to support using it for installing extensions (#2688)
- update wxPython easyblock to support wxPython v4.1 (#2689)
- enhance Gurobi easyblock to also update $MATLABPATH (#2691)
- build single-file shared libraries for imkl so it can be used as FlexiBLAS backend via $FLEXIBLAS_LIBRARY_PATH (#2694)
- various bug fixes, including:
- added regex to replace /lib/cpp with cpp in OpenFOAM's wmake rules file (#2331)
- set $NINJAFLAGS to make sure Ninja doesn't use all visible cores when building Qt5 (#2338)
- update Siesta EasyBlock to use serial FFTW (#2662)
- fix support for imkl for numexpr 2.8.0+ in numexpr easyblock (#2678)
- make sure TensorFlow doesn't see the nvptx-none dir when searching for gcc include dir (#2682)
- force use of bash for Anaconda install script (#2692)
- add guess for path to add to $MANPATH for intel-compilers (#2696)
- change permissions of the Java build directory to avoid permission denied error (#2698)
- also consider $MKLROOT/lib/pkgconfig for $PKG_CONFIG_PATH for imkl (#2701)
- close log after installing Bundle component (#2702)
- replace hardcoded /tmp to make sure that Bazel build respects $TMPDIR (#2703)
- other changes:
- minor code cleanup in numexpr easyblock (#2679)
- update copyright lines for 2022 (#2705)
v4.5.3 (February 11th 2022)
---------------------------
update/bugfix release
- new software-specific easyblock for reticulate R package (#2668)
- minor enhancements and updates, including:
- set CUDA target architecture(s) for GROMACS based on cuda_cc_semicolon_sep template value (#2655)
- add support to NAMD easyblock to opt out of building with CUDA support even if CUDA is included as dependency (#2666)
- update sanity check in CUDA easyblock: CUDA 11.6 no longer includes samples (#2669)
- various bug fixes, including:
- also run easyblocks test suite with Python 3.8-3.10 + consistently use actions/setup-python@v2 in CI workflows (#2664)
- specify easybuild.io as EasyBuild homepage in setup.py (#2667)
- other changes:
- remove vulnerable binaries from sanity check of HDF5, no longer installed by default with HDF5 1.10.8 (#2670)
v4.5.2 (January 24th 2022)
--------------------------
update/bugfix release
- minor enhancements and updates, including:
- remove necessity for license for oneAPI versions (>= 2021.x) in itac easyblock (#2492)
- add CUDA support in SuiteSparse easyblock (#2627)
- use all available cores for running Perl test suite (#2637)
- add option to not copy the license file for Gurobi (#2639, #2641)
- update AOCC easyblock to support version 3.2.0 (#2643)
- don't grep for specific version in --version output of Intel compiler commands for versions 2022.x (#2644)
- add support for enabling sanity checks for specific components in the Bundle easyblock (#2649)
- update Libint easyblock for LibInt v2.7.0 which requires configuring via CMake (#2650)
- update Mathematica easyblock for version 13 (#2652)
- add sanity check command for Bazel (#2653)
- update NAMD easyblock to allow non-system csh (#2654)
- enhance CUDA easyblock to create version independent pkgconfig files (#2656)
- add util subdirectory to $PATH for WPS (#2658)
- various bug fixes, including:
- convert version numbers to stricly numerical in Siesta easyblock (#2553)
- fix shebang of scripts in Perl installation if installation prefix is too long (#2640)
- enhance IntelBase easyblock to avoid crash when $USER is not set (#2642)
- fix quotes in definition of default platform macro and enhance sanity check in GATE easyblock (#2645)
- avoid excessively long shebang line in compile script for WRF (#2648)
- fix checking of Intel Fortran compiler version in CP2K easyblock for recent toolchains (#2651)
v4.5.1 (December 13th 2021)
---------------------------
update/bugfix release
- new software-specific easyblock for Clang-AOMP (#2617)
- minor enhancements and updates, including:
- enhance Rpm generic easyblock to support installing tarball of RPMs (by unpacking it first) + take into account (pre)installopts (#2580)
- add option to control use of MKL-DNN in jaxlib easyblock (#2619)
- update SAMtools easyblock to support installation of SAMtools 1.14 (#2620)
- add option to ignore PLUMED version check for GROMACS (#2621)
- update Inspector easyblock for recent versions (>= 2021, oneAPI versions) (#2624)
- enhance tbb easyblock by adding option to build Python bindings (#2626)
- fix patching of CMakeLists.txt in for Eigen v3.4 (#2633)
- various bug fixes, including:
- update CP2K easyblock to use -D__MKL for CP2K versions newer than 2.3 (#2586)
- set OpenMPI configuration for ORCA sanity check (#2596)
- allow oversubscription in OpenMPI sanity check (#2611)
- set wm_* class variables in OpenFOAM easyblock constructor (to fix --sanity-check-only) (#2616)
- remove newline from easybuild-easyblocks package description (required to avoid installation error with setuptools>=59.0.0) (#2623)
- avoid patching binary files + other enhancements for MUMmer easyblock (#2630)
- enable build-in-installdir mode in constructor of PETSc and SLEPc easyblocks (#2631)
- skip netcdf4-python tests that require network connectivity (#2634)
v4.5.0 (October 29th 2021)
--------------------------
feature release
- new software-specific easyblock for imkl-FFTW (#2599)
- minor enhancements and updates, including:
- add support for installing R extensions in parallel (#2408)
- update MotionCor2 easyblock to consider to locations for built binary (#2541, #2598)
- let GROMACS runtime logs show EasyBuild was used by setting -DGMX_VERSION_STRING_OF_FORK configuration option (#2571)
- adjust qa list in WIEN2k easyblock to handle new questions + fix sanity check for v21.1 (#2572)
- enhance GCC easyblock to add support for AMD GPU offloading (#2578)
- add support for specifying subdirectory for target installation directory in CMakMake (#2579)
- enhance COMSOL easyblock to change permission on build directory during extract step (to allow using patches) (#2584)
- enhance FlexiBLAS easyblock to support building with Intel MKL (imkl) as backend (#2588)
- update MATLAB easyblock for 2021b (jre is no longer included) (#2589)
- update OpenCV easyblock to detect GTK3 and GTK2 dependencies (next to GTK+) (#2591)
- avoid that path to CUDA install directory is added to $PATH (#2593)
- enhance imkl easyblock to add support for installing with NVHPC (#2595)
- enhance PETSc easyblock to run tests in parallel (#2601)
- update ELSI easyblock to support two new external dependencies (#2602)
- add custom custom easyconfig parameter 'backends' in FlexiBLAS easyblock to specify backends (#2605)
- detect problem with compiling CPU detection code in configure output in GROMACS easyblock (#2609)
- use correct include directory for FlexiBLAS (#2610)
- various bug fixes, including:
- unset $EASYBUILD_* environment variables when running sanity check in EasyBuildMeta easyblock + also unset $MODULES_LMCONFLICT to avoid conflict when loading EasyBuild module (#2568)
- ensure that all ABAQUS components get installed for ABAQUS 2021.x (+ add support for enabling/disabling fe-safe) (#2569)
- fix subdir path in VTune easyblock for 2021.x versions + add sanity check command (#2576)
- make sure custom easyblock for installing EasyBuild respects requested version of Python (like $EB_PYTHON) (#2581)
- restore RPATH wrappers for OpenMPI sanity check (#2582)
- fix installation of libcp2k for recent CP2K versions (#2585)
- make version regex in OpenSSL wrapper easyblock less strict (version string does not always end with a letter) (#2597)
- redefine collect_exts_file_info instead of now deprecated fetch_extension_sources in OCaml easyblock (#2603)
- other changes:
- don't use --config=mkl for TensorFlow 2.4+ (#2583)
- this fixes some performance related issues for TensorFlow, see https://github.com/easybuilders/easybuild-easyblocks/issues/2577 and https://github.com/easybuilders/easybuild-easyconfigs/issues/14120
- fix support for recent imkl version in numexpr easyblock (#2606)
- derive custom easyblock from MotionCor2 from PackedBinary instead of EasyBlock (#2607)
v4.4.2 (September 7th 2021)
---------------------------
update/bugfix release
- 4 new software-specific easyblocks:
- CRISPR-DAV (#2487), jaxlib (#2545), ORCA (#2504), RepeatModeler (#2470)
- minor enhancements, including:
- update ABAQUS easyblock to support installation of v2020 (#2034)
- enable make check and sanity check exec for OpenMPI (#2444)
- fixed sanity check for later versions of Molpro (#2499)
- add Ampere to known GPU architectures for Kokkos in LAMMPS easyblock (#2510)
- update sanity check in ESMF easyblock to take into account new binary names from version 8.1.0 onwards (#2512)
- use report_test_failure in TensorFlow easyblock (#2519)
- add suport for imkl 2021.x in easyblocks for
- Amber (#2527), BerkeleyGW (#2528), CP2K (#2529), FreeFEM (#2530), GROMACS (#2531), numexpr (#2532)
- add install_src option and enhance buildcmd option in PythonPackage easyblock (#2534)
- make sure AOCC commands like clang/flang pick up GCCcore as GCC toolchain (#2538)
- create CMakeConfig files for tbb >= 2020 (#2539)
- find source dir for libunwind when building ldd for Clang versions >= 12.0.1 (#2540)
- fix motorBike test in sanity check for OpenFOAM 9 (#2544)
- generate and install pkg-config files for OpenSSL wrapper (#2549)
- don't run 'setup.py config' for numpy >= 1.21, since it's no longer supported (#2554)
- update WIEN2k easyblock to handle new Intel versions, WIEN2k v21, Perl dependency, and tuning of dimension parameters (#2558)
- remove PCRE from list of system libraries for TensorFlow 2.6.0 (#2559)
- add support for also installing Tosca component in ABAQUS (#2560)
- update ABAQUS easyblock to support installing of version 2021 with hot fixes (#2562)
- update sanity check in VTune easyblock for 2021.x versions (#2563)
- various bug fixes, including:
- handle failure of running nvidia-smi in TensorFlow tests (#2506)
- remove Python 2.6 from list of supported Python versions in setup.py (#2507)
- clean up installation of Tkinter (#2509)
- remove redundant $CPATH entry of tbb modules + fix --module-only (#2511)
- honor --ignore-test-failure in PythonPackage (#2516)
- use correct GTK+ version for OpenCV based on dependencies (#2520)
- ensure Python prep is done in sanity check + support debug builds in TensorFlow easyblock (#2522)
- correct cleanup of single-letter local variable in __init__ of easybuild.easyblocks (#2524)
- reset runtest to None in CMakePythonPackage (#2536)
- set $I_MPI_ROOT correctly for 2021.x in impi easyblock (#2537)
- let Bundle easyblock pick up custom easyblock for components based on name if no easyblock is specified explicitly (#2543, #2547)
- explicitely use only OpenBLAS for PyTorch if MKL is not used (#2448)
- keep symlinks in cuDNN installations (#2550)
- use ${BLAS,LAPACK}_SHARED_LIBS in GROMACS easyblock for FlexiBLAS-based toolchains (#2552)
- copy the list to avoid changing the original lists in DEFAULT_TARGETS_MAP for Clang and LLVM (#2556)
- fix pathsep join bug that breaks installation of CUDA versions < 10.1 if $PERL5LIB is defined (#2561)
- other changes:
- simplify Boost easyblock (#2513)
- remove deprecated options from PythonPackage (#2535)
v4.4.1 (July 6th 2021)
----------------------
update/bugfix release
- 5 new software-specific easyblocks:
- AOMP (#2435, #2462, #2464), FreeFEM (#1969), NCCL (built from source) (#2337, #2460), torchvision (#2467), UCX plugins (#2491)
- minor enhancements, including:
- enhance Amber easyblock to support installing Amber via CMake (#2445)
- enhance ConfigureMake generic easyblock to add support for building multiple build targets (#2449, #2479, #2480)
- enhance sanity check for Clang to verify if CUDA offload library was produced (#2454)
- update custom easyblock for Boost to always build single and multi threaded versions (#2456)
- enhance sitecustomize.py in Python easyblock to support overriding core Python packages, and allowing overriding in virtualenv (#2458, #2483)
- update CMakeMake to handle old and new Boost/Boost.Python builds using custom easyblock for Boost (#2461)
- add file prefix option to XALT easyblock (#2463)
- enhance Java easyblock to define %(jdkarch)s template (#2472)
- adjust Perl easyblock to only check for a 'man' subdirectory if groff is a dependency (#2474)
- support arbitrary version strings in OpenSSL wrapper and add minimum_openssl_version option (#2475)
- enhance Python easyblock to explicitly disable installing core-pip when install_pip is not True (#2476)
- enhance intel-compiler easyblock to inlude multipath include dir in $CPATH (#2477)
- enhance Hypre easyblock to enable CUDA support (#2482)
- update Xmipp easyblock for new version (v3.20.07) (#2486)
- enhance FFTW easyblock to skip tests if --mpi-tests EasyBuild configuration option is disabled (#2490)
- use PYPI_SOURCE as the default for source_urls of extensions of Python easyconfigs (#2493)
- various bug fixes, including:
- only use siterc fix for NVHPC < 21.3 (#2453)
- fix CPU-only runtime for dpcpp-generated executables in custom easyblock for intel-compilers (#2457)
- always add distinct_host_configuration=false to build command for TensorFlow (#2459)
- disable installation of bundled BioPerl and HTSLib if they are dependencies of VEP (#2468)
- don't use list value for command to detect installed Python packages in TensorFlow easyblock (#2469)
- change Bundle easyblock to also collect altroot and altversion in the module step so they are set when running --module-only (#2485)
- always strip output from "gcc -print-multiarch" in intel-compilers easyblock (#2489)
- don't overwrite all of exts_default_options in TensorFlow easyblock (#2494)
- enhance GCC easyblock to make sure that system GCC provides LTO support, and disable LTO when building MPFR if not (#2498)
- rework the dependency handling of OpenMPI to use explicit configure options to disable features if required
dependency is not provided (#2500, #2501)
v4.4.0 (June 2nd 2021)
----------------------
feature release
- 3 new software-specific easyblocks:
- FlexiBLAS (#2369, #2422, #2424, #2426)
- dm-reverb (#2413)
- custom easyblock to install OpenSSL wrapper for OpenSSL installed in OS, with fallback to build and install OpenSSL from source if not available in OS (#2429)
- minor enhancements, including:
- also add -pthread to prebuildopts of cryptography (#2270)
- don't unpack Python wheel (*.whl) files by default in generic PythonPackage easyblock (#2366, #2442)
- enable installation of samples for CUDA > 10.1 (#2374)
- add option to disable pip connecting to PyPi (enable use of --no-index) (#2390)
- update MotionCor2 easyblock to handle new version and be aware of CUDAcore (#2394)
- make it possible to force disabling kernel features in Qt easyblock (#2403)
- update imkl easyblock to support oneAPI versions (>= 2021.x) (#2407)
- add "gurobi_cl --help" as default sanity check command for Gurobi (#2411)
- enhance BWA easyblock to copy includes and libraries (#2417)
- allow 'default' versions to be defined by ModuleRC easyblock (#2418)
- enhance MesonNinja and CMakeMake easyblocks to create unused build dir when separate_build_dir is set (#2419)
- enable sanity_pip_check by default for Python easyconfigs if pip >= 9.0 will be installed (#2423)
- enhance FFTW easyblock to support SVE CPU feature and building with Fujitsu compiler (#2425)
- make ScaLAPACK easyblock aware of FlexiBLAS (#2427)
- update imkl easyblock to unpack example tarballs and set $MKL_EXAMPLES (+ some code cleanup) (#2430)
- update list of system libs for TensorFlow 2.5 (#2432)
- allow disabling MPI tests when installing Intel MPI (impi) via --disable-mpi-tests (#2440)
- exclude bottleneck tests in PyTorch (#2450)
- various bug fixes, including:
- ensure lib subdirectory is found in stage 2 of GCC installation + fall back to lib64 (#2339)
- fix permission on MATLAB installer config file so it can be written to (#2385)
- fix problem with installing older CUDA versions that uses the Perl based installer (#2387)
- enhance Python easyblock: add option to install pip with core Python, tweak defaults, create unversioned pip symlink (#2388)
- fix installopts before installing the extension in GROMACS easyblock (#2391)
- updated numpy easyblock to use read_file for patch (#2395)
- use explicit build toolset and compiler path in Boost easyblock (#2402)
- replace hardcoded '2021.1.1' with 'self.version' in impi easyblock (#2405)
- set $SANDCASTLE when running PyTorch tests to disable some tests as-if we are on Facebook's CI (#2412)
- make GROMACS easyblock work with --module-only (#2414)
- make sure OpenFOAM sanity checks don't require builddir write permissions (#2415)
- make Tkinter easyblock work with --module-only (#2416)
- also disable altivec with FFTW 3.3.9 on POWER (#2437)
- make sure that self.python_cmd is set before using it in PythonPackage.sanity_check_step (#2447)
- other changes, including:
- update setup.py to indicate compatibility with Python 3.8 and 3.9 (#2384)
- use on_error rather than deprecated log_error named argument for which function (#2406)
- remove cuda_compute_capabilities from custom easyconfig parameters for Clang, LAMMPS and TensorFlow (now supported as general easyconfig parameter) (#2433)
v4.3.4 (April 9th 2021)
-----------------------
update/bugfix release
- minor enhancements, including:
- make OpenCV easyblock aware of protobuf, libwebp and OpenEXR dependencies provided via EasyBuild (#2346)
- update CP2K easyblock w.r.t. running regtest for CP2K v8.1 (#2350)
- update GROMACS easyblock for GROMACS/2021 with CUDA (#2353)
- adjust call to python-config for Python >= 3.8 in VMD easyblock (#2355)
- enhance cuDNN and CUDA easyblocks to support aarch64 (#2356)
- pass down compiler flags provided by EasyBuild in g2clib easyblock (#2357)
- update VTune easyblock for version 2020 (#2359)
- make WRF and WPS easyblocks aware of (pre)configopts (#2361)
- add Clang version 12.0.0 for AOCC 3.0.0 to mapping in custom easyblock for AOCC (#2362)
- use PYPI_SOURCE as the default for source_urls of PythonPackage (#2364, #2370)
- enhance PythonPackage easyblock to catch faulty version (0.0.0) for installed Python packages (#2367, #2377)
- enhance BWA easyblock: pass compiler flags + use filetools functions (#2368)
- various bug fixes, including:
- set $R_LIBS_SITE rather than $R_LIBS when installing R packages (#2326)
- update PETSc easyblock to take into account that ScaLAPACK installation may not have header files + fix building in parallel (#2348)
- disable CMake user package repository in CMakeMake generic easyblock (#2351)
- update LAPACK easyblock to keep control of compiler options for versions >= 3.9.0 (#2358)
- also set $TORCH_CUDA_ARCH_LIST for PyTorch tests (#2363)
- enhance Hadoop easyblock to avoid copying same native library twice (#2371)
- fix pip extension download pattern for PythonPackage easyblock (#2372)
- make the CUDA stub libs take preference over system libs when linking (#2373)
- improve Python package version check and add unversioned_packages easyconfig parameter (#2377)
v4.3.3 (February 23rd 2021)
---------------------------
update/bugfix release
- 2 new software-specific easyblocks:
- AOCC (#2295), Intel compilers (v2021.x, oneAPI) (#2305)
- minor enhancements, including:
- run motorBike tutorial case as sanity check for recent (community) OpenFOAM versions (#2201)
- add foamMonitor to sanity checks of OpenFOAM (#2256)
- create versioned symlinks for CMake commands + create symlink for 'cmake3' in PyTorch easyblock if cmake3 command is not found (#2259)
- improve Bazel easyblock: add support for running tests, enable static linking, use build dir rather than tmpdir, verbose output (#2285)
- add support for skipping steps in Python packages installed as extension + print progress on individual steps for installing Python packages as extensions (#2290)
- update BerkeleyGW easyblock to support GCC 10 and fftlib (#2297)
- update QuantumESPRESSO easyblock to support GCC 10 (#2298)
- update Clang easyblock to add support for building extra tools + leveraging hwloc and Z3 as optional dependencies (#2310)
- add support for running TensorFlow CPU and GPU tests (#2263, #2292, #2312)
- update impi easyblock for impi 2021.x (oneAPI) (#2313)
- update QuantumESPRESSO easyblock to handle v6.7 (#2319)
- update OpenFOAM easyblock for changes in v2012 (#2321)
- add sanity check commands to GCC (including LTO support) (#2322)
- update FLUENT sanity check for v2021R1 (#2334)
- various bug fixes, including:
- filter out user packages in LAMMPS easyblock if corresponding dependency isn't included + only set -DUSER-INTEL on x86_64 systems (#2254)
- unify handling of pylibdirs and don't add duplicated $PYTHONPATH in PythonBundle (#2281)
- enhance Amber easyblock to fix running of update_amber script when 'python' command is not available in OS (#2282)
- guard 'module unload' statements in modules for Cray* toolchains (#2286)
- set $PYTHONNOUSERSITE in PythonBundle.extensions_step to avoid picking up on Python packages installed in $HOME (#2289)
- create less temporary directories for TensorFlow by (only) using --output_user_root (#2293)
- fix logic w.r.t. enabling Python support in PETSc (#2299)
- make builddeps a list of names in SLEPc easyblock (#2300)
- make builddeps a list of names in Trilinos easyblock (#2301)
- make sure the installation of libiberty.a in the binutils easyblock goes into a populated directory (#2308)
- fix for building GCC with --sysroot on ppc64le (#2315)
- fix OpenFOAM sanity check on POWER (#2320)
- use library search paths of compiler for RPATH when building binutils with system compiler + enhance sanity check by running --version for binutils commands (#2323, #2327)
- pass $CXXFLAGS to PDT's configure script via '-useropt' (#2324)
- pass down compilation flags from build environment for ESMF (#2325)
- update URLs for test data for WRF to https (#2335)
- read MATLAB configuration file in binary mode to avoid UTF-8 encoding errors when using Python 3.6 (#2340)
- fix Boost sanity check on POWER (#2291) and aarch64 (#2341)
- other changes, including:
- rework module-only tests to use unique software name (rather than 'foo') (#2287)
- prefer default value for extra options in easyblock tests (#2280, #2302)
- add check for accepted EULA in custom easyblock for NVHPC (#2311)
- update optional feature support of TensorFlow (#2314)
- make symlinking of posix_c.so to posix.so in test suite configuration conditional (#2330)
v4.3.2 (December 10th 2020)
---------------------------
update/bugfix release
- 2 new software-specific easyblocks:
- code-server (#2255), Metagenome-Atlas (#2219)
- minor enhancements, including:
- add -fallow-argument-mismatch option when building CP2K 7.1 or older with GCC 10.x (#2223)
- update TensorFlow easyblock for upcoming TensorFlow 2.4 (#2225)
- add support for building Clang with OpenMP offload support (#2229)
- enhance OpenMPI easyblock to catch any --with-ucx* configure options (#2230)
- take into account preinstallopts and installopts in custom easyblock for NCL (#2234)
- add support for withnvptx easyconfig parameter, to enable GPU offloading, in GCC easyblock (#2235)
- take into account versions like '4.x' in OpenFOAM easyblock (#2239)
- also add 'bin' subdir to $PATH when installing a Python package (#2244)
- various bug fixes, including:
- fix two bugs in GROMACS easyblock when using GCC & MKL for FFT and BLAS/LAPACK (#2212)
- fix version check in Qt5 easyblock w.r.t. disabling features on old Linux kernel versions (#2220)
- always define $FCCPP in QuantumESPRESSO easyblock (not just when using Intel compilers) (#2221)
- allow wxPython to be installed as an extension (#2227, #2275)
- only configure Python with --enable-optimizations when compiling Python with (recent) GCC compiler (#2228)
- fix sanity check for Boost MT libraries (#2231)
- fix hardcoded path in NVHPC easyblock to support multiple architectures (#2233)
- fix CPASSERT test faults on RHEL8 in CP2K easyblock (#2236)
- stop silently ignoring failing numpy tests, but include support for ignoring (failing) numpy tests (#2238, #2271)
- append to module guesses in easyblocks for Chapel, icc, imkl and impi (rather than overwriting guesses from parent easyblock) (#2242)
- weed out duplicates when determining paths to include-fixed subdirectory in GCC easyblock (#2245)
- prepend all hardcoded /usr/* paths with sysroot in Python's setup.py installation script (#2246)
- don't try to patch newer versions of Bazel where the patches won't apply (#2249)
- fix setting of $RUNPARALLEL in HDF5 easyblock (#2250)
- move --build and --host logic to run_configure_cmd in GCC easyblock (#2252)
- set $UCX_TLS in module for impi installation on top of UCX, and allow it to be overwritten in impi easyconfig file (#2253, #2258)
- enhance PyTorch easyblock to ensure it finds MKL (via $MKLROOT) (#2257)
- use integer division to determine number MPI ranks to use in WRF test step (#2266)
- also specify locincpth and glibpth configure options for Perl based on --sysroot (#2268)
- other changes, including:
- add link to GCC mailing list thread confirming that binutils should not be configured with --with-sysroot=$EASYBUILD_SYSROOT when GCC is being configured like that (#2215)
- pass paths to patch one by one to apply_regex_substitutions in GCC easyblock when --sysroot is set (#2217)
- workaround for regression in apply_regex_substitutions introduced in EasyBuild v4.3.1 (which was fixed for v4.3.2)
v4.3.1 (October 29th 2020)
--------------------------
update/bugfix release
- 2 new software-specific easyblocks:
- CFDEMcoupling (#1439), NVHPC (#2190)
- minor enhancements, including:
- support having PyQt5 installed as part of Qt5 in QScintilla easyblock (#2040)
- update TensorFlow easyblock to put Bazel build files in build directory + avoid unnecessary runtime patching (#2166)
- update CBLAS easyblock for toolchains that include imkl (#2175)
- add workaround for duplicate prefix path in Eigen CMake config (#2176)
- enable CTEST_OUTPUT_ON_FAILURE for CMakeMake test step (#2181)
- add XLA build support to TensorFlow easyblock (#2182)
- also consider libfabric dep (--with-ofi) when setting default OpenMPI configure options (#2184)
- make easyblock for installing CMake aware of --sysroot (#2187)
- make OpenBLAS respect the parallelism set by easybuild (#2191)
- handle option of building Michigan State University CCT3 & CCSD3A methods in GAMESS_US easyblock (#2194)
- add support to RubyGem easyblock for installing zipped gems (#2203)
- update ScaLAPACK easyblock to support installation with CMake for recent versions (>= v2.1.0) (#2205)
- update Score-P easyblock to add support for NVHPC toolchain (#2206)
- various bug fixes, including:
- add torch/lib subdirectory in Python lib dir to $LD_LIBRARY_PATH for PyTorch installations (#2183)
- update MUMmer easyblock to use apply_regex_substitutions and copy_file functions (#2185)
- configure OpenMPI 4.x with --without-verbs when using UCX (#2188)
- take into account that zlib may be listed in --filter-deps in custom easyblock for XML R package (#2189)
- add sanity check commands to Clang easyblock and print warning for missing ncurses (#2193)
- enhance OpenFOAM easyblock to add symlinks for libraries to ensure 'mpi' versions have preference over 'dummy' versions (#2196)
- leverage installed OpenSSL/BoringSSL when cURL is used as a dependency for TensorFlow (#2197)
- add -ffree-line-length-none to gfortran flags in Siesta easyblock (#2204)
- respect --disable-mpi-tests in Siesta easyblock (#2207)
- other changes, including:
- set $EB_INSTALLPYTHON in module generated for EasyBuild rather than setting $EB_PYTHON, to allow overriding Python command to be used for running EasyBuild with $EB_PYTHON (#2109)
- remove unused custom easyblock for DIRAC (#2192, #2198)
v4.3.0 (September 13th 2020)
----------------------------
feature release
- 2 new software-specific easyblocks:
- pybind11 (#2115), PyTorch (#2104)
- minor enhancements, including:
- update MATLAB easyblock to use new binary installer for versions >= 2020a (#2058)
- add use_pip_requirement custom easyconfig parameter to PythonPackage easyblock to allow providing a requirements file to the pip command, as a source (#2064)
- update CP2K easyblock for recent versions (>= 7.0) (#2069)
- add multi_deps support into custom easyblock for QScintilla (#2077)
- update Mothur easyblock for v1.44.0 and higher (#2084)
- update MotionCor2 easyblock to add support for v1.3.2 (#2100)
- update Tinker easyblock to handle skipping of tests depending on version and link with fftw_omp (#2102)
- launch test & sanity check commands through mpirun for netcdf4-python if MPI support is enabled (#2106)
- check for installation of pip & setuptools in Python 3.4+ (#2108)
- update QuantumESPRESSO easyblock to support version 6.6 (#2112)
- allow NAMD to be built on POWER, and also use the CUDA arch info (#2113, #2123)
- update Libint easyblock for versions >= 2.6.0 + add custom easyconfig parameter to enable Fortran support (#2116)
- update TensorFlow easyblock to use system/EasyBuild installed libraries (#2117, #2165, #2163, #2172)
- add support in NAMD easyblock to pass additional C++ compiler options for building Charm++ component with + wrap them in single quotes (#2118)
- automatically add required '-G Ninja' option when using CMakeNinja easyblock + add 'generator' custom easyconfig parameter for CMakeMake (#2120)
- make several easyblocks aware of --sysroot EasyBuild configuration option: binutils (#2147, #2159), CMakeMake (#2152), GCC (#2143), Perl (#2142), Python (#2148, #2149)
- make Mesa easyblock aware of aarch64 (#2153)
- enhance sanity check in custom Doxygen easyblock to catch broken installation (#2171)
- various bug fixes, including:
- make TensorFlow easyblock ignore the PKG_REVISION identifier if NCCL version if it exists (#2085)
- remove version check against the version.txt file in CUDA easyblock (#2097)
- add 'lib' symlink in tbb installation directory when building from source (#2103)
- handle GNUInstallDirs special cases in CMakeMake easyblock (#2105, #2124)
- patch ELPA's manual_cpp script to fix hardcoded '/usr/bin/python' (#2107)
- make TensorFlow easyblock also set $GCC_HOST_COMPILER_PREFIX to specify binutils location (#2110)
- ensure stand-alone Python package being installed is in view when running 'pip check' by loading fake module first (#2114)
- be more patient when running interactive configure script for WRF (#2119)
- make sure self.start_dir is set to a full path before constructing installation command in RPackage easyblock (#2125)
- correctly check whether 'modinc' easyconfig parameter is set to True in CP2K easyblock (#2138)
- update PSI easyblock to correctly find Python and enable PCMSolver/CheMPS2 (#2141)
- fix running GROMACS tests when using 'eb --rpath' (#2144, #2154)
- remove existing Python installation directory if both 'eb --rpath' and --enable-optimizations configuration option are used (#2146)
- ensure libQt5Core.so is compatible with older Linux kernels by disabling renameat2 and getentropy features (#2151)
- solve issue where pybind11 picks up on the system Python instead of one provided by a module (#2158)
- fix Qt5 easyblock to support installation on Arm/aarch64 (requires platform to be linux-g++) (#2160)
- fix OpenFOAM easyblock to support installation on Arm/aarch64 systems (#2162)
- explicitely enable/disable CUDA options in PyTorch easyblock + fix download check in sanity check + fix for disabling of *NNPACK on POWER systems (#2164)
- fix sanity check in Mathematica easyblock for 11.x versions older than 11.3 (#2168)
- unset $COLUMNS if it is set to '0' before running Perl's configure script (#2169)
- other changes:
- filter out Python in SLEPc configure (#2101)
- switch to status badge based on tests run in GitHub Actions CI in README (#2126)
- fix code style issues to make flake8 checks pass (#2128-#2137, #2140, #2145, #2155)
- limit test configurations in Travis CI to only Python 2.6 (#2139)
v4.2.2 (July 8th 2020)
----------------------
update/bugfix release
- 3 new software-specific easyblocks:
- LLVM (#2065), Scipion (#1847), XALT (#1942)
- minor enhancements, including:
- use 'wclean -platform' instead of 'wcleanPlatform' for OpenFOAM v2006 & newer (#2088)
- various bug fixes, including:
- only build OpenCV with IPP support on x86_64 systems (#2056)
- make sure CFLAGS and MYCFLAGS are used in Lua easyblock (#2062)
- also accept 'exist_lic' as valid value for 'license_file' in IntelBase easyblock (#2067)
- fix minor bug in shared libs handling and correctly setup SuiteSparse variables in Trilinos easyblock (#2071)
- make sure PythonBundle uses correct 'python' command in extensions filter + also add lib64/python*/site-packages to $PYTHONPATH (if it exists) (#2075, #2081)
- fix build environment for WRF by patching shebang in compile script (#2079)
- fix order of intel64/lib paths in generated module for impi (and drop intel64/lib/release_mt) (#2080)
- set $XDG_CACHE_HOME to avoid abuse of $HOME/.cache/pip when installing DOLFIN (#2082)
- make VMD easyblock Python 3 compatible (#2083)
- rename include-fixed subdirectory in GCC installation to avoid problems after OS upgrade (#2087, #2093, #2094)
- use glob pattern to determine name of Mathematica installation script (#2089)
- use mpirun for sanity check commands in LAMMPS easyblock (#2096)
v4.2.1 (May 20th 2020)
----------------------
update/bugfix release
- add generic easyblock for installing Go packages: GoPackage (#2042)
- minor enhancements, including:
- update config.guess for all R packages, required installing R + extensions on Linux/POWER systems (#1949)
- add support for preinstallopts and install in subdirectory to Tarball generic easyblock (#1989, #2049)
- rewrite GROMACS easyblock to install all four variations (single/double precision, with/without MPI) in the same directory (#1991)