hca roadmap - post meeting questions

[arschat]

After our HCA Roadmap 2024 we came up with questions to specific people before we try to prioratize our tasks and goals.

1. Tony: In core milestone 1 which costs are we aiming to reduce? Do we have a target?
2. John: Have we reached a decision on how to lower egress costs for the Data Portal? does it include download from ENA? bonus --> will it cover lattice datasets as well
3. John: Is there a case where we want to make metadata MA even if contributors have consent to release it as OA? Is there a minimum standard for metadata protection in HCA policies?
4. John/Lucia: What is the expectation around tier 2 and the atlas object? Will the atlas include tier 2? Would that make the atlas MA?
5. Jason: Is there any published cxg dataset with the full tier 1 metadata?
6. Jason + Lucia: Is there any network close to publish T1 metadata?
7. Jason + Lucia: If datasets wrangled by lattice have been selected and need Tier 2 addition, how is it going to be handled? Does the lattice team have/ can have DPA?
8. Bobbie: Can we have a meeting to discuss what the partial updates are going to address?
9. Ida/Arsenios: How many projects from w1 & w2 are in a complete status? If a lot of them are we need a solution for updating files

[arschat]

About Q9:
There are 73 projects in complete state. Out of those:

• 15 project in wave1 or wave2
• 17 projects in wave1 or wave2 or wave3
  How to update those?

[idazucchi]

Q8: working on the partial updates is not Bobbie's priority now but she shared the notes from the last discussion that was held around changing the importer's behaviour and the scenarios are broken down in this document
in theory scenario 2 should cover the case where file descriptors are presnt but the data files themselves aren't

[idazucchi]

@gabsie can you review the questions?

[arschat]

Here's an update for those questions as of today.

1. Tony: In core milestone 1 which costs are we aiming to reduce? Do we have a target?
   Not to worry until 2025 Q1-Q2

2. John: Have we reached a decision on how to lower egress costs for the Data Portal? does it include download from ENA? bonus --> will it cover lattice datasets as well
   Not to worry until 2025 Q1-Q2

3. John: Is there a case where we want to make metadata MA even if contributors have consent to release it as OA? Is there a minimum standard for metadata protection in HCA policies?

4. John/Lucia: What is the expectation around tier 2 and the atlas object? Will the atlas include tier 2? Would that make the atlas MA?
   Not yet answered.

5. Jason: Is there any published cxg dataset with the full tier 1 metadata?
   Yes, look in comments of CxG-Tier 1 to DCP notebook #1252 for 3 examples

6. Jason + Lucia: Is there any network close to publish T1 metadata?
   Lung is facing problems with embeddings but is getting there

7. Jason + Lucia: If datasets wrangled by lattice have been selected and need Tier 2 addition, how is it going to be handled? Does the lattice team have/ can have DPA?
   Not yet answered. Lattice team can NOT deal with MA.

8. Bobbie: Can we have a meeting to discuss what the partial updates are going to address?
   Not yet raised.

9. Ida/Arsenios: How many projects from w1 & w2 are in a complete status? If a lot of them are we need a solution for updating files
   There are 15 projects from w1 & w2 that have submissions in complete state.

   list of proj in complete state

   1. 27e2e0ae-5971-4927-aac1-19e81804097b
   2. 69324a96-a68a-4514-bbb4-f8f3ea4bd0f1
   3. cbd3d276-9f24-4af9-8381-b11f6cdbdc4b
   4. 50154d1e-2308-44bf-9608-10c7afaa560b
   5. 7a8d45f1-353b-4508-8e89-65a96785b167
   6. 1dd552a5-eb4f-4b92-8088-7224bcbd0629
   7. 17cf943b-e247-454f-908b-da58665fcc56
   8. 415eb773-cadb-43d1-ab89-7d160d5cfc7d
   9. 28dd1438-8f40-40d0-8e53-ee3301b66218
   10. 222a92d5-277b-489c-aad8-a680d1fd2b12
   11. c211fd49-d980-4ba1-8c6a-c24254a3cb52
   12. 73769e0a-5fcd-41f4-9083-41ae08bfa4c1
   13. 23509202-1e3c-4959-8a45-9c5b642a1066
   14. 031980e6-9f2b-433a-8f6e-081bd9aad0a3
   15. 894ae6ac-5b48-41a8-a72f-315a9b60a62e