HumanBrainSubstantiaNigra_GSE140231

[ami-day]

Primary Wrangler: Ami

Secondary Wrangler: TBD

Google Drive: https://drive.google.com/drive/folders/1nfROiTEIpWqDjjV6pjJFtkIY6ACY218w

s3 bucket: TBC

Key Events

• Fill spreadsheet (to a sufficient standard to submit dataset)

• Curate metadata spreadsheet with ontologies

• Get CellType annotation (either from publication supplements or by contacting the authors)

• Get expression matrices (either from publication supplements or by contacting the authors)

• Upload sheet to validate metadata

• Upload data (to a sufficient standard to submit dataset)

• Check linking (graph validator)

• Ask the Secondary Wrangler for review of the project

• Submit dataset

[ESapenaVentura]

Just finished reviewing:

It looks great! I have only changed 2 things in project - contributors:

• Changed the project_role text to Human Cell Atlas Data Wrangler (The browser and ingest use those strings)
• Changed the contributors that weren't point of contacts to "no"

[ami-day]

Thanks @ESapenaVentura uploading the metadata and data to ingest now

[ami-day]

There is an issue with syncing files to ingest prod. (not specific to individual projects), so uploading the fastq files to ingest prod. for this project is currently blocked.

[ami-day]

Exported.

[ami-day]

Brokering to SCEA with ID: E-HCAD-25

[rays22]

This dataset has been exported to the Terra staging area.

[lauraclarke]

This needs an update associated with https://app.zenhub.com/workspaces/operations-5fa2d8f2df78bb000f7fb2b5/issues/ebi-ait/hca-ebi-wrangler-central/271

[clairerye]

Update on this project is possible and these changes can be made it the UI and then the project needs re-export using the 'metadata only' flag.

Details in chat
https://embl-ebi-ait.slack.com/archives/C01360XN04S/p1615322790140000

V3 needs to be changed to v2

[ami-day]

update done.

[lauraclarke]

@ami-day does this update also need to be propagated to SCEA?