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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<!-- meta data -->
<modelVersion>4.0.0</modelVersion>
<groupId>org.mskcc.cbio</groupId>
<artifactId>master</artifactId>
<packaging>pom</packaging>
<name>Portal Master</name>
<!-- project version is generated through git or can be passed as
PROJECT_VERSION env variable (see version.sh) -->
<version>0-unknown-version-SNAPSHOT</version>
<description>master maven module</description>
<scm>
<developerConnection>scm:git:https://github.com/cBioPortal/cbioportal.git</developerConnection>
</scm>
<repositories>
<repository>
<id>alfresco</id>
<name>Alfresco</name>
<url>https://artifacts.alfresco.com/nexus/content/repositories/public/</url>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>jitpack.io</id>
<url>https://jitpack.io</url>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>jitpack.io</id>
<url>https://jitpack.io</url>
</pluginRepository>
</pluginRepositories>
<profiles>
<profile>
<id>public</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<properties>
<importer-main-class>org.mskcc.cbio.importer.Admin</importer-main-class>
</properties>
<build>
<plugins>
<plugin>
<groupId>com.github.cbioportal.maven-external-version</groupId>
<artifactId>maven-external-version-plugin</artifactId>
<version>f09c2b9608</version>
<extensions>true</extensions>
<configuration>
<strategy hint="script">
<script>./version.sh</script>
</strategy>
</configuration>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.5</version>
<executions>
<!--
Prepares the property pointing to the JaCoCo runtime agent which
is passed as VM argument when Maven the Surefire plugin is executed.
-->
<execution>
<id>pre-unit-test</id>
<phase>process-test-classes</phase>
<goals>
<goal>prepare-agent</goal>
</goals>
<configuration>
<!-- Sets the path to the file which contains the execution data. -->
<destFile>${project.build.directory}/coverage-reports/jacoco-ut.exec</destFile>
<!--
Sets the name of the property containing the settings
for JaCoCo runtime agent.
-->
<propertyName>argLine</propertyName>
</configuration>
</execution>
<!--
Ensures that the code coverage report for unit tests is created after
unit tests have been run.
-->
<execution>
<id>post-unit-test</id>
<phase>test</phase>
<goals>
<goal>report</goal>
</goals>
<configuration>
<!-- Sets the path to the file which contains the execution data. -->
<dataFile>${project.build.directory}/coverage-reports/jacoco-ut.exec</dataFile>
<!-- Sets the output directory for the code coverage report. -->
<outputDirectory>${project.build.directory}/coverage-reports/jacoco-ut</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<!-- copy portal.properties.EXAMPLE and log4j.properties.EXAMPLE if they don't exist -->
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
<version>1.8</version>
<!-- only needs to be executed for parent pom -->
<inherited>false</inherited>
<executions>
<execution>
<phase>validate</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<taskdef resource="net/sf/antcontrib/antlib.xml" classpathref="maven.dependency.classpath"/>
<if>
<not>
<available file="${basedir}/src/main/resources/portal.properties"/>
</not>
<then>
<copy file="${basedir}/src/main/resources/portal.properties.EXAMPLE" tofile="${basedir}/src/main/resources/portal.properties"/>
</then>
</if>
<if>
<not>
<available file="${basedir}/src/main/resources/logback.xml"/>
</not>
<then>
<copy file="${basedir}/src/main/resources/logback.xml.EXAMPLE" tofile="${basedir}/portal/src/main/webapp/WEB-INF/logback.xml"/>
</then>
<else>
<copy file="${basedir}/src/main/resources/logback.xml" tofile="${basedir}/portal/src/main/webapp/WEB-INF/logback.xml"/>
</else>
</if>
</target>
</configuration>
</execution>
</executions>
<dependencies>
<dependency>
<groupId>ant-contrib</groupId>
<artifactId>ant-contrib</artifactId>
<version>1.0b3</version>
<exclusions>
<exclusion>
<groupId>ant</groupId>
<artifactId>ant</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant-nodeps</artifactId>
<version>1.8.1</version>
</dependency>
</dependencies>
</plugin>
<!-- Generate test DB schema without key `UQ_MUTATION_EVENT_DETAILS` to accommodate H2 MySQL driver not supporting partial indexes -->
<plugin>
<artifactId>exec-maven-plugin</artifactId>
<groupId>org.codehaus.mojo</groupId>
<version>1.6.0</version>
<inherited>false</inherited>
<executions>
<execution>
<id>Generate Test DB schema</id>
<phase>integration-test</phase>
<goals>
<goal>exec</goal>
</goals>
<configuration>
<executable>${basedir}/db-scripts/src/main/resources/gen-cgds-test-schema.sh</executable>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>pl.project13.maven</groupId>
<artifactId>git-commit-id-plugin</artifactId>
<version>2.2.4</version>
<executions>
<execution>
<id>get-the-git-infos</id>
<goals>
<goal>revision</goal>
</goals>
<!-- *NOTE*: The default phase of revision is initialize, but in case you want to change it, you can do so by adding the phase here -->
<phase>initialize</phase>
</execution>
<execution>
<id>validate-the-git-infos</id>
<goals>
<goal>validateRevision</goal>
</goals>
<!-- *NOTE*: The default phase of validateRevision is verify, but in case you want to change it, you can do so by adding the phase here -->
<phase>package</phase>
</execution>
</executions>
<configuration>
<generateGitPropertiesFile>true</generateGitPropertiesFile>
<gitDescribe>
<tags>true</tags>
</gitDescribe>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>external</id>
<properties>
<importer-main-class>org.mskcc.cbio.importer.PortalImporterTool</importer-main-class>
<final-war-name>cbioportal</final-war-name>
</properties>
</profile>
<profile>
<id>heroku</id>
<build>
<plugins>
<!-- copy files in heroku/ to root-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<!-- only needs to be executed for parent pom -->
<inherited>false</inherited>
<version>2.7</version>
<dependencies>
<dependency>
<groupId>org.apache.maven.shared</groupId>
<artifactId>maven-filtering</artifactId>
<version>1.3</version>
</dependency>
</dependencies>
<executions>
<execution>
<id>copy-resources</id>
<phase>validate</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>.</outputDirectory>
<resources>
<resource>
<directory>heroku/</directory>
<filtering>true</filtering>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
<!-- don't generate git.properties on heroku (unf doesn't work, since
.git directory is not accessible during build) -->
<plugin>
<groupId>pl.project13.maven</groupId>
<artifactId>git-commit-id-plugin</artifactId>
<executions>
<execution>
<id>get-the-git-infos</id>
<phase>none</phase>
</execution>
<execution>
<id>validate-the-git-infos</id>
<phase>none</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<properties>
<frontend.version>05de966cb6b5127bc7a249ea4e93efe7ae082172</frontend.version>
<frontend.groupId>com.github.cbioportal</frontend.groupId>
<spring.version>5.2.20.RELEASE</spring.version>
<spring.integration.version>5.3.0.RELEASE</spring.integration.version>
<spring.security.version>5.3.1.RELEASE</spring.security.version>
<spring.social.version>1.1.6.RELEASE</spring.social.version>
<jackson.version>2.13.0</jackson.version>
<mysql-connector.version>5.1.48</mysql-connector.version>
<webapp-runner.version>8.5.61.0</webapp-runner.version>
<slf4j.version>1.7.32</slf4j.version>
<logback.version>1.2.10</logback.version>
<springfox.version>3.0.0</springfox.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<bundle.symbolicName.prefix>org.mskcc</bundle.symbolicName.prefix>
<bundle.namespace>org.mskcc.mondrian</bundle.namespace>
<timestamp>${maven.build.timestamp}</timestamp>
<maven.build.timestamp.format>yyyyMMdd-HHmm</maven.build.timestamp.format>
<sonar.projectKey>cBioPortal_cbioportal</sonar.projectKey>
<sonar.moduleKey>${project.groupId}:${project.artifactId}</sonar.moduleKey>
<sonar.organization>cbioportal</sonar.organization>
<sonar.host.url>https://sonarcloud.io</sonar.host.url>
<final.war.name>cbioportal</final.war.name>
<db.test.driver>com.mysql.jdbc.Driver</db.test.driver>
<!-- For MySQL < 5.5 change 'default_storage_engine' to 'storage_engine' -->
<db.test.url>jdbc:mysql://127.0.0.1:3306/cgds_test?sessionVariables=default_storage_engine=InnoDB&allowLoadLocalInfile=true</db.test.url>
<db.test.username>cbio_user</db.test.username>
<db.test.password>somepassword</db.test.password>
<!--For tomcat instances, the scope to tomcat catalina lib should be provided. this prop is used in portal module.-->
<tomcat.catalina.scope>provided</tomcat.catalina.scope>
<tomcat.session.timeout>720</tomcat.session.timeout>
<!-- THIS SHOULD BE KEPT IN SYNC TO VERSION IN CGDS.SQL -->
<db.version>2.12.14</db.version>
</properties>
<modules>
<module>portal</module>
<!-- TODO: the frontend probably needs adjustment. At the very least, the portal API has changed to include the isGermline field, so the public and internal API projects need to be updated and rebuilt (a script does this) -->
<!-- TODO: the frontend also need to have the "germline" indicator be added to the table showing structural variants ... like the indicator on mutation records which are germline -->
<module>core</module>
<module>web</module>
<module>model</module>
<module>persistence</module>
<module>service</module>
<module>scripts</module>
<module>db-scripts</module>
<module>security</module>
<module>utils</module>
</modules>
<dependencies>
<!--logging implementation shared by modules-->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<dependencyManagement>
<dependencies>
<!-- modules -->
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>portal</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>core</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>web</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>model</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>persistence</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>persistence-api</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>persistence-connections</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>persistence-mybatis</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>service</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>scripts</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>db-scripts</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>security</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>security-spring</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>permission-evaluator</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>org.mongodb</groupId>
<artifactId>mongo-java-driver</artifactId>
<version>3.12.9</version>
</dependency>
<dependency>
<groupId>org.mskcc.cbio</groupId>
<artifactId>utils</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>com.github.cbioportal</groupId>
<artifactId>session-service</artifactId>
<classifier>model</classifier>
<version>v0.5.0</version>
</dependency>
<!-- external dependencies -->
<!-- mysql -->
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>${mysql-connector.version}</version>
</dependency>
<!-- Apache commons -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<version>3.11</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
<version>1.9</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-math3</artifactId>
<version>3.6.1</version>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
<version>1.9.4</version>
</dependency>
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.4</version>
</dependency>
<dependency>
<groupId>org.apache.geronimo.bundles</groupId>
<artifactId>commons-discovery</artifactId>
<version>0.4_1</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<version>2.8.0</version>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.8.0</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.15</version>
</dependency>
<!-- Apache http components -->
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.3.6</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpcore</artifactId>
<version>4.3.2</version>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
<version>3.1</version>
</dependency>
<!-- javax for JVM 11 -->
<dependency>
<groupId>javax.annotation</groupId>
<artifactId>javax.annotation-api</artifactId>
<version>1.3.2</version>
</dependency>
<dependency>
<groupId>javax.el</groupId>
<artifactId>javax.el-api</artifactId>
<version>3.0.0</version>
</dependency>
<dependency>
<groupId>org.glassfish.web</groupId>
<artifactId>javax.el</artifactId>
<version>2.2.6</version>
</dependency>
<!-- hibernate validator -->
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-validator</artifactId>
<version>5.3.4.Final</version>
</dependency>
<!-- mockito -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>3.3.3</version>
<scope>test</scope>
<exclusions>
<exclusion>
<artifactId>hamcrest-core</artifactId>
<groupId>org.hamcrest</groupId>
</exclusion>
</exclusions>
</dependency>
<!-- vlkan -->
<dependency>
<groupId>com.vlkan.hrrs</groupId>
<artifactId>hrrs-servlet-filter-base64</artifactId>
<version>0.5</version>
</dependency>
<!-- guava -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>29.0-jre</version>
</dependency>
<!-- mybatis -->
<dependency>
<groupId>org.mybatis</groupId>
<artifactId>mybatis-spring</artifactId>
<version>2.0.4</version>
</dependency>
<dependency>
<groupId>org.mybatis</groupId>
<artifactId>mybatis</artifactId>
<version>3.5.7</version>
</dependency>
<!-- slf4j -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-core</artifactId>
<version>${logback.version}</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>${logback.version}</version>
</dependency>
<!-- spring -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-expression</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aop</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>5.2.6.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework.integration</groupId>
<artifactId>spring-integration-core</artifactId>
<version>${spring.integration.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.integration</groupId>
<artifactId>spring-integration-sftp</artifactId>
<version>${spring.integration.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-orm</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-jdbc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${spring.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${spring.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>io.reactivex.rxjava2</groupId>
<artifactId>rxjava</artifactId>
<version>2.2.19</version>
</dependency>
<!-- Spring Security -->
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-core</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-config</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-web</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-test</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-ldap</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-openid</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-taglibs</artifactId>
<version>${spring.security.version}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-acl</artifactId>
<version>${spring.security.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-jwt</artifactId>
<version>1.0.11.RELEASE</version>
<exclusions>
<exclusion>
<groupId>org.bouncycastle</groupId>
<artifactId>bcprov-jdk15on</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.springframework.security.oauth</groupId>
<artifactId>spring-security-oauth2</artifactId>
<version>2.2.5.RELEASE</version>
</dependency>
<dependency>
<groupId>org.springframework.security.extensions</groupId>
<artifactId>spring-security-saml2-core</artifactId>
<version>1.0.3.RELEASE</version>
</dependency>
<!-- Spring Social -->
<dependency>
<groupId>org.springframework.social</groupId>
<artifactId>spring-social-config</artifactId>
<version>${spring.social.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.social</groupId>
<artifactId>spring-social-core</artifactId>
<version>${spring.social.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.social</groupId>
<artifactId>spring-social-security</artifactId>
<version>${spring.social.version}</version>
</dependency>
<dependency>
<groupId>org.springframework.social</groupId>
<artifactId>spring-social-web</artifactId>
<version>${spring.social.version}</version>
</dependency>
<!-- Spring Social Google-->
<dependency>
<groupId>com.github.spring-social</groupId>
<artifactId>spring-social-google</artifactId>
<version>1.1.3</version>
</dependency>
<!-- Spring Social Live -->
<dependency>
<groupId>com.github.cbioportal</groupId>
<artifactId>spring-social-live</artifactId>
<version>40100de1ad80e2865c834f2b64b32bb6c2b368ce</version>
<exclusions>
<exclusion>
<groupId>javax.servlet</groupId>
<artifactId>servlet-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- jackson -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jdk8</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>jackson-dataformat-yaml</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<!-- junit -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<!-- h2 database -->
<dependency>
<groupId>com.h2database</groupId>
<artifactId>h2</artifactId>
<version>1.4.197</version>
<scope>test</scope>
</dependency>
<!-- cache -->
<dependency>
<groupId>javax.cache</groupId>
<artifactId>cache-api</artifactId>
<version>1.1.0</version>
</dependency>
<dependency>
<groupId>org.ehcache</groupId>
<artifactId>ehcache</artifactId>
<version>3.7.1</version>
</dependency>
<!-- Google guice -->
<dependency>
<groupId>com.google.inject</groupId>
<artifactId>guice</artifactId>
<version>2.0</version>
</dependency>
<!-- javax servlet -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
</dependency>
<!-- jsonwebtoken -->
<dependency>
<groupId>io.jsonwebtoken</groupId>
<artifactId>jjwt-api</artifactId>
<version>0.10.5</version>
</dependency>
<dependency>
<groupId>io.jsonwebtoken</groupId>
<artifactId>jjwt-impl</artifactId>
<version>0.10.5</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>io.jsonwebtoken</groupId>
<artifactId>jjwt-jackson</artifactId>
<version>0.10.5</version>
<scope>runtime</scope>
</dependency>
<!-- jstl -->
<dependency>
<groupId>jstl</groupId>
<artifactId>jstl</artifactId>
<version>1.2</version>
<scope>runtime</scope>
</dependency>
<!-- other deps -->
<dependency>
<groupId>org.apache.tomcat</groupId>
<artifactId>tomcat-catalina</artifactId>
<version>7.0.68</version>
<scope>
${tomcat.catalina.scope}
</scope>
</dependency>
<dependency>
<groupId>org.osgi</groupId>
<artifactId>org.osgi.service.component.annotations</artifactId>
<version>1.4.0</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>cglib</groupId>
<artifactId>cglib</artifactId>
<version>2.2</version>
</dependency>
<dependency>
<groupId>com.googlecode.json-simple</groupId>
<artifactId>json-simple</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-bean-validators</artifactId>
<version>${springfox.version}</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-boot-starter</artifactId>
<version>${springfox.version}</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-oas</artifactId>
<version>${springfox.version}</version>
</dependency>
<dependency>
<groupId>io.springfox</groupId>
<artifactId>springfox-spring-web</artifactId>
<version>${springfox.version}</version>
</dependency>
<dependency>
<groupId>org.mapstruct</groupId>
<artifactId>mapstruct</artifactId>
<version>1.0.0.Final</version>
</dependency>
<dependency>
<groupId>com.jayway.jsonpath</groupId>
<artifactId>json-path-assert</artifactId>
<version>2.4.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.github.romain-warnan</groupId>
<artifactId>simple-java-bitly</artifactId>
<version>1.1</version>
</dependency>
<dependency>
<groupId>commons-validator</groupId>
<artifactId>commons-validator</artifactId>
<version>1.6</version>
</dependency>
<dependency>
<groupId>io.sentry</groupId>
<artifactId>sentry-spring</artifactId>
<version>1.7.2</version>
</dependency>
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjweaver</artifactId>
<version>1.8.12</version>
</dependency>
<dependency>
<groupId>com.datumbox</groupId>
<artifactId>datumbox-framework-lib</artifactId>
<version>0.8.1</version>
</dependency>
<dependency>
<groupId>org.owasp</groupId>
<artifactId>antisamy</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.antlr</groupId>
<artifactId>antlr-runtime</artifactId>
<version>3.2</version>
</dependency>
<dependency>
<groupId>net.sf.jopt-simple</groupId>
<artifactId>jopt-simple</artifactId>
<version>3.0-rc2</version>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-api</artifactId>
<version>2.0.1</version>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-graph-impl</artifactId>
<version>2.0.1</version>
</dependency>
<dependency>
<groupId>net.sf.opencsv</groupId>
<artifactId>opencsv</artifactId>
<version>2.3</version>
</dependency>
<dependency>
<groupId>batik</groupId>
<artifactId>batik</artifactId>
<version>1.5</version>
</dependency>
<dependency>
<groupId>batik</groupId>
<artifactId>batik-rasterizer</artifactId>
<version>1.5</version>
</dependency>
<dependency>
<groupId>org.apache.xmlgraphics</groupId>
<artifactId>batik-codec</artifactId>
<version>1.7</version>
<exclusions>
<exclusion>
<groupId>xalan</groupId>
<artifactId>xalan</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>