Problem with build on Mac OSX

[cogitas3d]

Hey there!

I vever had problem with compilation of DicomToMesh, but after I upgrade brew on Mac I had a lot...

First, the system doesn't found Qt, so, I solve it with:

cmake .. -DCMAKE_PREFIX_PATH=$(brew --prefix qt5)

After I had an error on Python 3, so, I solve it with:

brew link python@3.8

I did the cmake again:

-- The C compiler identification is AppleClang 10.0.0.10001044 -- The CXX compiler identification is AppleClang 10.0.0.10001044 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found OpenGL: /System/Library/Frameworks/OpenGL.framework found components: OpenGL -- Found Python3: /usr/local/Frameworks/Python.framework/Versions/3.8/bin/python3.8 (found suitable version "3.8.5", minimum required is "3.8") found components: Interpreter Development.Module Development.Embed -- Found FontConfig: /usr/local/lib/libfontconfig.dylib -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/local/lib/libhdf5.dylib;/usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib (found version "1.12.0") found components: C HL -- Found LibXml2: /usr/lib/libxml2.dylib (found version "2.9.4") -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.11") -- Found PNG: /usr/local/lib/libpng.dylib (found version "1.6.37") -- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0") -- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0") found components: serialization -- Found EXPAT: /usr/lib/libexpat.dylib (found version "2.2.1") -- Found JPEG: /usr/local/lib/libjpeg.dylib (found version "90") -- Found TIFF: /usr/local/lib/libtiff.dylib (found version "4.1.0") CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-use-file-deprecated.cmake:1 (message): The VTK_USE_FILE` is no longer used starting with 8.90.
Call Stack (most recent call first):
lib/CMakeLists.txt:6 (include)

-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0")
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0") found components: serialization
CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-use-file-deprecated.cmake:1 (message):
The VTK_USE_FILE is no longer used starting with 8.90.
Call Stack (most recent call first):
dicom2mesh/CMakeLists.txt:6 (include)

-- Configuring done
-- Generating done
-- Build files have been written to: /Users/cogitas3d/Programs/DicomToMesh/build/UILD_GUI=OFF
MacBook-Pro-de-Cicero:build cogitas3d$ make
make: *** No targets specified and no makefile found. Stop.
MacBook-Pro-de-Cicero:build cogitas3d$ ls
CMakeCache.txt CMakeFiles UILD_GUI=OFF
MacBook-Pro-de-Cicero:build cogitas3d$ ls
CMakeCache.txt CMakeFiles UILD_GUI=OFF
MacBook-Pro-de-Cicero:build cogitas3d$ cmake .. -DCMAKE_PREFIX_PATH=$(brew --prefix qt5)
-- The C compiler identification is AppleClang 10.0.0.10001044
-- The CXX compiler identification is AppleClang 10.0.0.10001044
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found OpenGL: /System/Library/Frameworks/OpenGL.framework found components: OpenGL
-- Found Python3: /usr/local/Frameworks/Python.framework/Versions/3.8/bin/python3.8 (found suitable version "3.8.5", minimum required is "3.8") found components: Interpreter Development.Module Development.Embed
-- Found FontConfig: /usr/local/lib/libfontconfig.dylib
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/local/lib/libhdf5.dylib;/usr/local/lib/libsz.dylib;/usr/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib (found version "1.12.0") found components: C HL
-- Found LibXml2: /usr/lib/libxml2.dylib (found version "2.9.4")
-- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.11")
-- Found PNG: /usr/local/lib/libpng.dylib (found version "1.6.37")
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0")
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0") found components: serialization
-- Found EXPAT: /usr/lib/libexpat.dylib (found version "2.2.1")
-- Found JPEG: /usr/local/lib/libjpeg.dylib (found version "90")
-- Found TIFF: /usr/local/lib/libtiff.dylib (found version "4.1.0")
CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-use-file-deprecated.cmake:1 (message):
The VTK_USE_FILE is no longer used starting with 8.90.
Call Stack (most recent call first):
lib/CMakeLists.txt:6 (include)

-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0")
-- Found Boost: /usr/local/lib/cmake/Boost-1.73.0/BoostConfig.cmake (found suitable exact version "1.73.0") found components: serialization
CMake Deprecation Warning at /usr/local/lib/cmake/vtk-9.0/vtk-use-file-deprecated.cmake:1 (message):
The VTK_USE_FILE is no longer used starting with 8.90.
Call Stack (most recent call first):
dicom2mesh/CMakeLists.txt:6 (include)

-- Configuring done
-- Generating done
-- Build files have been written to: /Users/cogitas3d/Programs/DicomToMesh/build`

But, when I did the make and:

Scanning dependencies of target dicom2meshlib [ 10%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/dicomFactory.cpp.o [ 20%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/dicomRoutines.cpp.o [ 30%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshData.cpp.o [ 40%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshRoutines.cpp.o [ 50%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshVisualizer.cpp.o /Users/cogitas3d/Programs/DicomToMesh/lib/src/meshVisualizer.cpp:70:23: error: no member named 'ConstructInstance' in 'vtkObjectFactory' vtkObjectFactory::ConstructInstance(result->GetClassName()); ~~~~~~~~~~~~~~~~~~^ 1 error generated. make[2]: *** [lib/CMakeFiles/dicom2meshlib.dir/src/meshVisualizer.cpp.o] Error 1 make[1]: *** [lib/CMakeFiles/dicom2meshlib.dir/all] Error 2 make: *** [all] Error 2

Is it possible solve it?

Thank you.

[cogitas3d]

Is it possible build without the meshvisualizer?

[eidelen]

Hi Cicero,
It comes likely form VTK 9. Some other people had problems too. We have to tackle that at one point... I'm sorry.

[cogitas3d]

@eidelen Do you think that have another way to solve it in Mac?

[eidelen]

I made a quick fix for VTK 9 (v9.0.1). Please checkout the particular branch:

git pull
git checkout vtk-9-experimental

Then build as usual. The sophisticated vtk-dicom library cannot be used currently. They seem to work on the issue.

[cogitas3d]

I made cmake and do not appear the problem with VTK, but, when run make:

MacBook-Pro-de-Cicero:build cogitas3d$ make Scanning dependencies of target dicom2meshlib [ 10%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/dicomFactory.cpp.o [ 20%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/dicomRoutines.cpp.o [ 30%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshData.cpp.o [ 40%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshRoutines.cpp.o [ 50%] Building CXX object lib/CMakeFiles/dicom2meshlib.dir/src/meshVisualizer.cpp.o /Users/cogitas3d/Programs/DicomToMesh-vtk-9-experimental/lib/src/meshVisualizer.cpp:70:23: error: no member named 'ConstructInstance' in 'vtkObjectFactory' vtkObjectFactory::ConstructInstance(result->GetClassName()); ~~~~~~~~~~~~~~~~~~^ 1 error generated. make[2]: *** [lib/CMakeFiles/dicom2meshlib.dir/src/meshVisualizer.cpp.o] Error 1 make[1]: *** [lib/CMakeFiles/dicom2meshlib.dir/all] Error 2 make: *** [all] Error 2 MacBook-Pro-de-Cicero:build cogitas3d$

[eidelen]

I can compile on OSX, VTK 9.0.1. However, I made a branch without visualization for the mean time.

git pull
git checkout  vtk-9-novisual

Does this work?

[cogitas3d]

Master @eidelen

It works perfectly! Thank you very much!