Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Replacing all nucleosides (i.e. w/o base) with peptides from the library in view mode causes invalid canvas - hanging bond and undeletable @ symbol #5254

Closed
AlexeyGirin opened this issue Aug 8, 2024 · 1 comment · Fixed by #5259 or #5271
Closed

Replacing all nucleosides (i.e. w/o base) with peptides from the library in view mode causes invalid canvas - hanging bond and undeletable @ symbol #5254

AlexeyGirin opened this issue Aug 8, 2024 · 1 comment · Fixed by #5259 or #5271
Assignees
@svvald
Labels
Monomer Library Priority: High Sequence mode Bucket: Sequence mode related issues
Milestone
Ketcher 2.24.0-rc.2

Comments

@AlexeyGirin
Copy link
Collaborator

AlexeyGirin commented Aug 8, 2024 •
edited
Loading

Steps to Reproduce

  1. Go to Macromolecules mode - Sequence mode
  2. Load from file: Replacing all nucleosides (i.e. w_o base) with peptides from the library in view mode causes invalid canvas - hanging bond and undeletable @ symbol.zip
    image
  3. Select all monomers (in view mode)
    image
  4. Go to Library - Peptides tab
  5. Click on A peptide
  6. Switch to Flex mode

Actual behavior

  1. Sequence contains @ symbol that is impossible to delete
  2. In Flex mode - hanging bond
    image

Expected behavior
No hanging bonds, no @ symbol
image

Versions

  • Ketcher Version 2.24.0-rc.1 Build at 2024-08-06; 19:17:47
  • Indigo Toolkit Version 1.23.0-rc.1.0-g85f89b8f5-wasm32-wasm-clang-19.0.0
  • Windows 10 Pro
  • Chrome Version 127.0.6533.100 (Official Build) (64-bit)

Related issue - #4878
@AlexeyGirin AlexeyGirin added this to the Ketcher 2.24.0-rc.2 milestone Aug 8, 2024
@svvald svvald self-assigned this Aug 8, 2024
This was linked to pull requests Aug 8, 2024
Backmerge: #5242 - Replace phosphate at the end with petide causes cycled polymer #5259
Merged
#5242 - Replace phosphate at the end with petide causes cycled polymer #5271
Merged
@AlexeyGirin
Copy link
Collaborator Author

Fixed.
image

  • Ketcher Version 2.24.0-rc.2 Build at 2024-08-14; 19:00:14
  • Indigo Toolkit Version 1.23.0-rc.2.0-g6a2a7526a-wasm32-wasm-clang-19.0.0
  • Chrome Version 127.0.6533.100 (Official Build) (64-bit)
  • Win10

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@svvald svvald

Labels
Monomer Library Priority: High Sequence mode Bucket: Sequence mode related issues
Projects
None yet
Milestone
Ketcher 2.24.0-rc.2
2 participants
@svvald @AlexeyGirin