epiviz.py

from epivizfileserver import setup_app, create_fileHandler, MeasurementManager
from epivizfileserver.trackhub import TrackHub

mMgr = MeasurementManager()

# create file handler
mHandler = create_fileHandler()

# add genome
genome = mMgr.add_genome("hg19")

trackhubs = [
    "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/ATAC/Subclass/"
    # "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/ATAC/Class/",
    # "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/ATAC/Cluster/",
    "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/ATAC/Subclass/",
    "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/dnaMethylation/MajorCluster/CGN/",
    "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/dnaMethylation/MajorCluster/CHN/",
    # "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/dnaMethylation/SubCluster/CGN/",
    # "http://data.nemoarchive.org/nemoHub/CrossSpeciesPaperMOp/Human/dnaMethylation/SubCluster/CHN/"
]

for th in trackhubs:
    tth = TrackHub(th)
    mMgr.measurements.extend(tth.measurements)

# start app
app = setup_app(mMgr)

if __name__ == "__main__":
    app.run(host="0.0.0.0", port=8000)