Chueatwork add file format tags (awslabs#608)

* Fix description formatting

* Update beataml.yaml

* Add spp

* Add spp, life sciences, aws-pds tags

* Add spp

* Update aws-igenomes.yaml

* Add spp and tags

* Add tags

* Add file extensions

Author: chueatwork

datasets/allen-brain-observatory.yaml

@@ -14,6 +14,7 @@ Tags:
   - life sciences
   - signal processing
   - electrophysiology
+  - Mus musculus
 License: http://www.alleninstitute.org/legal/terms-use/
 Resources:
   - Description: Project data files in a public bucket

datasets/allen-cell-imaging-collections.yaml

@@ -16,11 +16,15 @@ Contact: jacksonb@alleninstitute.org
 ManagedBy: "[Allen Institute for Cell Science](https://www.allencell.org)"
 UpdateFrequency: Biweekly
 Tags:
+  - aws-pds
+  - life sciences
   - biology
   - cell imaging
+  - cell biology
   - microscopy
   - image processing
   - machine learning
+  - Homo sapiens
 License: https://www.allencell.org/terms-of-use.html
 Resources:
   - Description: Data files in a public bucket

datasets/allen-mouse-brain-atlas.yaml

@@ -16,6 +16,7 @@ Tags:
   - life sciences
   - machine learning
   - transcriptomics
+  - Mus musculus
 License: http://www.alleninstitute.org/legal/terms-use/
 Resources:
   - Description: Project data files in a public bucket

datasets/aws-igenomes.yaml

@@ -5,10 +5,17 @@ Contact: https://github.com/ewels/AWS-iGenomes/issues
 UpdateFrequency: New data are added when available.
 Tags:
   - aws-pds
+  - agriculture
   - biology
   - genetic
   - genomic
   - life sciences
+  - reference index
+  - Caenorhabditis elegans
+  - Danio rerio
+  - Homo sapiens
+  - Mus musculus
+  - Rattus norvegicus
 License: Multiple - please see [data origins](https://github.com/ewels/AWS-iGenomes#data-origin).
 Resources:
   - Description: AWS-iGenomes S3 Bucket

datasets/broad-references.yaml

@@ -12,6 +12,8 @@ Tags:
   - genetic
   - genomic
   - life sciences
+  - reference index
+  - Homo sapiens
 License:  CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
 Resources:
   - Description: "This dataset includes two human genome references assembled by the Genome Reference Consortium: Hg19 and Hg38."

datasets/ccle.yaml

@@ -13,8 +13,12 @@ UpdateFrequency: |
 Tags:
   - aws-pds
   - cancer
+  - genetic
   - genomic
   - life sciences
+  - transcriptomics
+  - whole genome sequencing
+  - Homo sapiens
 License: "NIH Genomic Data Sharing Policy: https://gdc.cancer.gov/access-data/data-access-policies"
 Resources:
   - Description: RNA-Seq Alligned Reads, WXS Alligned Reads, WGS Alligned Reads

datasets/target.yaml

@@ -1,9 +1,11 @@
 Name: Therapeutically Applicable Research to Generate Effective Treatments (TARGET)
-Description: |
+Description: >
   Therapeutically Applicable Research to Generate Effective Treatments (TARGET) is the collaborative
   effort of a large, diverse consortium of extramural and NCI investigators. The goal of the effort
   is to accelerate molecular discoveries that drive the initiation and progression of hard-to-treat
-  childhood cancers and facilitate rapid translation of those findings into the clinic. TARGET projects provide comprehensive molecular characterization to determine the genetic changes
+  childhood cancers and facilitate rapid translation of those findings into the clinic.
+  
+  TARGET projects provide comprehensive molecular characterization to determine the genetic changes
   that drive the initiation and progression of childhood cancers.The dataset contains open Clinical
   Supplement, Biospecimen Supplement, RNA-Seq Gene Expression Quantification, miRNA-Seq Isoform
   Expression Quantification, miRNA-Seq miRNA Expression Quantification data from Genomic Data

tags.yaml

@@ -10,6 +10,7 @@
 - autism spectrum disorder
 - automatic speech recognition
 - autonomous vehicles
+- bam
 - biodiversity
 - bioinformatics
 - biology
@@ -34,13 +35,16 @@
 - conservation
 - coronavirus
 - COVID-19
+- cram
+- csv
 - culture
 - cyber security
 - Danio rerio
 - deep learning
 - demographics
 - denoising
 - dialog
+- dicom
 - digital preservation
 - disaster response
 - distributional semantics
@@ -57,6 +61,9 @@
 - energy
 - environmental
 - events
+- fasta
+- fastq
+- fast5
 - financial markets
 - fluorescence imaging
 - food security
@@ -69,6 +76,8 @@
 - geospatial
 - governance
 - government spending
+- h5
+- hdf5
 - health
 - high-throughput imaging
 - history
@@ -81,11 +90,13 @@
 - infrastructure
 - internet
 - intrusion detection
+- json
 - labeled
 - land
 - lidar
 - life sciences
 - loftee
+- long read sequencing
 - lightsheet microscopy
 - machine learning
 - machine translation
@@ -112,10 +123,12 @@
 - neuroimaging
 - neurophysiology
 - neuroscience
+- non-human primate
 - oceans
 - open source software
 - organelle
 - osm
+- pbi
 - pediatric
 - pharmaceutical
 - politics
@@ -133,6 +146,7 @@
 - satellite imagery
 - seismology
 - sentiment
+- short read sequencing
 - signal processing
 - simulations
 - single-cell transcriptomics
@@ -159,9 +173,11 @@
 - urban
 - us
 - us-dc
+- vcf
 - vep
 - virus
 - water
 - weather
 - whole genome sequencing
 - word embeddings
+- xml