2410 data release

[julesjacobsen]

This is primarily a phenotype data release, although the ClinVar data and gene identifiers have been updated in the genomic data sources.

Direct links:

2410_hg19
2410_hg38
2410_phenotype

Exomiser 2410 database data sources

Genomic Data

Transcripts:

• ensembl 87 (GRCh37)
• ensembl 111 (GRCh38, MANE)

Frequency sources:

• gnomAD exomes r2.1.1 (GRCh37), r4.1 (GRCh38)

• gnomAD genomes r2.1.1 (GRCh37), r4.1 (GRCh38)

• ESP6500SI-V2-SSA137.GRCh38-liftover

• UK10K_COHORT.20160215

• dbSNP 156

• gnomAD-SV v2.1

• dbVar 2023-09-18

• DGV 2020-02-25

• GONL 2016-10-13

• DECIPHER 2015

Pathogenicity sources:

• dbNSFP 4.5a (Polyphen, MutationTaster, SIFT, MVP, REVEL, AlphaMissense, SpliceAI) _n.b. SpliceAI annotations are free for academic and not-for-profit use; other use requires a commercial license from Illumina, Inc. _
• ClinVar 2024-11-11

Phenotype data

• OMIM 2024-10-18
• Orphanet 2024-07-03
• HPO 2024-08-13
• HPO annotations 2024-08-13
• IMPC release 21.1
• MP 2024-10-17
• Zfin downloaded 2024-10-18
• ZP downloaded 2024-10-18