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models-termplot.r
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#lor_mode
#c1
x <- models$lor_mode$c1 %>%
termplot(x, se=T,
partial.resid = T,
#ylim = c(-5,3),
lwd.term = 2, col.res = color_alpha("grey",.2),
xlabs = c("Elevation (m)","wind speed (knot)"),
ylabs = rep("Partials for 2nd order poly",2),
main="cheetah1")
#l
x <- models$lor_mode$l
termplot(x, se=T, partial.resid = T, lwd.term = 2,
col.res = color_alpha("grey",.2),
#ylim = c(-5,3),
xlabs = c("Elevation (m)", "Highway distance (m)", "Humidity (g/m^3)"),
ylabs = c(rep("Partials for 2nd order poly",2), "Partials for 1st order poly"),
main="leopard")
# RSF all
layout(matrix(1:4,2,byrow = T))
par(mar = c(3, 3, 1.5, 0), mgp = c(1.5, .5, 0), tck = -0.01,
cex.axis = 1.25, cex.lab = 1.25, bty = "l")
x <- models$rsf$all$c1
termplot(x, se=T, partial.resid = T,
lwd.term = 2, col.res = color_alpha(x$data$used + 1,.2),
xlabs = c("Elevation (m)", "Water distance (m)", "Slope", "Pathway distance (m)"),
ylabs = c(rep("Partials for 2st order poly",2), rep("Partials for 1st order poly",2)),
main="cheetah1")
legend( "topleft", c("used", "not used"), pch = 1, col = 2:1, bty = 'n')
x <- models$rsf$all$l
termplot(x, se=T, partial.resid = T,
lwd.term = 2, col.res = color_alpha(x$data$used + 1,.2),
xlabs = c("Elevation (m)", "Water distance (m)", "Slope", "Pathway distance (m)"),
ylabs = c(rep("Partials for 2st order poly",2), rep("Partials for 1st order poly",2)),
main="leopard")
legend("topleft", c("used","not used"),pch=1,col=2:1,bty='n')
# ssf moving --------------------------------------------------------------
x <- models$ssf$moving$c1
termplot(x, se=T,partial.resid = T,
lwd.term = 2,col.res = color_alpha("grey",.2),
ylim = c(-5,3),
xlabs = "Elevation (m)",
ylabs = "Partials for 2nd order poly",
main="cheetah")
x <- models$ssf$moving$l
termplot(x, se=T,partial.resid = T,
lwd.term = 2,
col.res = color_alpha("grey", .2),
ylim = c(-5,3),
xlabs = c("Water distance (m)", "Elevation (m)", "Highway distance (m)", "Pathway distance (m)"),
ylabs = c(rep("Partials for 1st order poly",3), "Partials for 1st order poly"),
main="leopard")