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Cell Time is not Accurate #13

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Liv-Weiner opened this issue Aug 8, 2022 · 0 comments
Open

Cell Time is not Accurate #13

Liv-Weiner opened this issue Aug 8, 2022 · 0 comments
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bug Something isn't working

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@Liv-Weiner
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Liv-Weiner commented Aug 8, 2022

In notebook 0:

sequences, metadata = pdbutils.retrieve_sequence_from_PDB(ref_sequences[0], mode='sequence', update=False, seqfile=seqfile)
for seq in ref_sequences[1:]:
    newseq, newmet = pdbutils.retrieve_sequence_from_PDB(seq, mode='sequence', update=False, seqfile=seqfile)
    sequences = np.append(sequences, newseq)
    metadata  = np.append(metadata, newmet)
print('{0} sequences were retrieved! \n'.format(len(sequences)))
for iseq in np.arange(len(sequences)):
    print('{0} {1}'.format(metadata[iseq], sequences[iseq]))```

CPU times: user 3 µs, sys: 0 ns, total: 3 µs
Wall time: 6.91 µs

The time is in µs but it has taken over an hour to run. The time is not updating.
@gdkwxn gdkwxn added the bug Something isn't working label Jul 29, 2024
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