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sequences, metadata = pdbutils.retrieve_sequence_from_PDB(ref_sequences[0], mode='sequence', update=False, seqfile=seqfile)
for seq in ref_sequences[1:]:
newseq, newmet = pdbutils.retrieve_sequence_from_PDB(seq, mode='sequence', update=False, seqfile=seqfile)
sequences = np.append(sequences, newseq)
metadata = np.append(metadata, newmet)
print('{0} sequences were retrieved! \n'.format(len(sequences)))
for iseq in np.arange(len(sequences)):
print('{0} {1}'.format(metadata[iseq], sequences[iseq]))```
CPU times: user 3 µs, sys: 0 ns, total: 3 µs
Wall time: 6.91 µs
The time is in µs but it has taken over an hour to run. The time is not updating.
The text was updated successfully, but these errors were encountered:
In notebook 0:
The text was updated successfully, but these errors were encountered: