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sessionInfo_macOS.txt
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> sessionInfo()
R version 4.0.1 (2020-06-06)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] viridis_0.6.1 viridisLite_0.4.0
[3] forcats_0.5.1 stringr_1.4.0
[5] purrr_0.3.4 readr_1.4.0
[7] tibble_3.1.6 tidyverse_1.3.1
[9] tidyr_1.1.4 sctransform_0.3.2
[11] scran_1.16.0 scater_1.16.2
[13] R.utils_2.10.1 R.oo_1.24.0
[15] R.methodsS3_1.8.1 RColorBrewer_1.1-2
[17] pheatmap_1.0.12 org.Mm.eg.db_3.11.4
[19] org.Hs.eg.db_3.11.4 MuSiC_0.1.1
[21] nnls_1.4 monocle3_1.0.0
[23] Matrix_1.3-4 MASS_7.3-54
[25] gtools_3.9.2 ggrepel_0.9.1
[27] ggrastr_0.2.3 ggpubr_0.4.0
[29] ggpointdensity_0.1.0 FARDEEP_1.0.1
[31] egg_0.4.5 ggplot2_3.3.5
[33] gridExtra_2.3 edgeR_3.30.3
[35] limma_3.44.3 dplyr_1.0.7
[37] doMC_1.3.7 iterators_1.0.13
[39] foreach_1.5.1 devtools_2.4.2
[41] usethis_2.0.1 data.table_1.14.0
[43] AnnotationDbi_1.50.3 MAST_1.14.0
[45] SingleCellExperiment_1.10.1 SummarizedExperiment_1.18.2
[47] DelayedArray_0.14.1 matrixStats_0.59.0
[49] Biobase_2.50.0 GenomicRanges_1.40.0
[51] GenomeInfoDb_1.24.2 IRanges_2.22.2
[53] S4Vectors_0.26.1 BiocGenerics_0.36.1
[55] varhandle_2.0.5 ROCR_1.0-11
[57] SeuratObject_4.0.2 Seurat_4.0.3
[59] e1071_1.7-9 reshape_0.8.8
[61] quadprog_1.5-8 BisqueRNA_1.0.5
loaded via a namespace (and not attached):
[1] SparseM_1.81 scattermore_0.7
[3] coda_0.19-4 bit64_4.0.5
[5] irlba_2.3.3 rpart_4.1-15
[7] RCurl_1.98-1.3 generics_0.1.0
[9] callr_3.7.0 cowplot_1.1.1
[11] RSQLite_2.2.7 RANN_2.6.1
[13] proxy_0.4-26 future_1.21.0
[15] bit_4.0.4 xml2_1.3.2
[17] lubridate_1.7.10 spatstat.data_2.1-0
[19] httpuv_1.6.5 assertthat_0.2.1
[21] hms_1.1.0 promises_1.2.0.1
[23] fansi_0.5.0 dbplyr_2.1.1
[25] readxl_1.3.1 igraph_1.2.6
[27] DBI_1.1.1 htmlwidgets_1.5.3
[29] mcmc_0.9-7 spatstat.geom_2.2-0
[31] ellipsis_0.3.2 backports_1.2.1
[33] MCMCpack_1.5-0 deldir_0.2-10
[35] vctrs_0.3.8 remotes_2.4.0
[37] quantreg_5.86 abind_1.4-5
[39] cachem_1.0.5 withr_2.4.2
[41] prettyunits_1.1.1 goftest_1.2-2
[43] cluster_2.1.2 lazyeval_0.2.2
[45] crayon_1.4.1 pkgconfig_2.0.3
[47] nlme_3.1-152 vipor_0.4.5
[49] pkgload_1.2.1 rlang_0.4.11
[51] globals_0.14.0 lifecycle_1.0.0
[53] miniUI_0.1.1.1 MatrixModels_0.5-0
[55] modelr_0.1.8 rsvd_1.0.5
[57] cellranger_1.1.0 rprojroot_2.0.2
[59] polyclip_1.10-0 lmtest_0.9-38
[61] carData_3.0-4 zoo_1.8-9
[63] reprex_2.0.0 beeswarm_0.4.0
[65] ggridges_0.5.3 processx_3.5.2
[67] png_0.1-7 bitops_1.0-7
[69] KernSmooth_2.23-20 blob_1.2.1
[71] DelayedMatrixStats_1.10.1 parallelly_1.26.0
[73] rstatix_0.7.0 ggsignif_0.6.2
[75] scales_1.1.1 memoise_2.0.0
[77] magrittr_2.0.1 plyr_1.8.6
[79] ica_1.0-2 zlibbioc_1.34.0
[81] compiler_4.0.1 dqrng_0.3.0
[83] fitdistrplus_1.1-5 cli_2.5.0
[85] XVector_0.28.0 listenv_0.8.0
[87] patchwork_1.1.1 pbapply_1.4-3
[89] ps_1.6.0 mgcv_1.8-36
[91] tidyselect_1.1.1 stringi_1.6.2
[93] BiocSingular_1.4.0 locfit_1.5-9.4
[95] grid_4.0.1 tools_4.0.1
[97] future.apply_1.7.0 rio_0.5.27
[99] rstudioapi_0.13 foreign_0.8-81
[101] Rtsne_0.15 digest_0.6.27
[103] shiny_1.6.0 Rcpp_1.0.8
[105] car_3.0-11 broom_0.7.8
[107] later_1.2.0 RcppAnnoy_0.0.18
[109] httr_1.4.2 colorspace_2.0-2
[111] rvest_1.0.0 fs_1.5.0
[113] tensor_1.5 reticulate_1.20
[115] splines_4.0.1 uwot_0.1.10
[117] statmod_1.4.36 conquer_1.0.2
[119] spatstat.utils_2.2-0 plotly_4.9.4.1
[121] sessioninfo_1.1.1 xtable_1.8-4
[123] jsonlite_1.7.2 testthat_3.0.3
[125] R6_2.5.0 pillar_1.6.4
[127] htmltools_0.5.1.1 mime_0.11
[129] glue_1.4.2 fastmap_1.1.0
[131] BiocParallel_1.22.0 BiocNeighbors_1.6.0
[133] class_7.3-19 codetools_0.2-18
[135] pkgbuild_1.2.0 utf8_1.2.1
[137] lattice_0.20-44 spatstat.sparse_2.0-0
[139] curl_4.3.2 ggbeeswarm_0.6.0
[141] leiden_0.3.8 zip_2.2.0
[143] openxlsx_4.2.4 survival_3.2-11
[145] desc_1.3.0 munsell_0.5.0
[147] GenomeInfoDbData_1.2.3 haven_2.4.1
[149] reshape2_1.4.4 gtable_0.3.0
[151] spatstat.core_2.2-0