mlpack-4.5.1 (untested)

Author: fd00

mlpack/README

@@ -6,45 +6,45 @@ analog to LAPACK, and aims to implement a wide array of machine learning
 methods and functions as a 'swiss army knife' for machine learning researchers.
 
 Runtime requirements:
-  cygwin-3.5.4-1
-  libarmadillo-devel-14.0.2-1bl1
-  libarmadillo14-14.0.2-1bl1
+  cygwin-3.5.7-1
+  libarmadillo-devel-14.4.0-1bl1
+  libarmadillo14-14.4.0-1bl1
   libgcc1-12.4.0-3
   libgomp1-12.4.0-3
   libstdc++6-12.4.0-3
   pkg-config-2.3.0-1
 
 Build requirements:
 (besides corresponding -devel packages)
-  binutils-2.43.1-1
+  binutils-2.44-1
   cereal-1.3.2-1bl2
   cmake-3.28.3-1
   cygport-0.36.9-1
-  ensmallen-2.21.1-1bl1
+  ensmallen-2.22.1-1bl1
   gcc-core-12.4.0-3
   gcc-g++-12.4.0-3
-  libarmadillo-devel-14.0.2-1bl1
-  ninja-1.12.0-1
+  libarmadillo-devel-14.4.0-1bl1
+  ninja-1.12.1-1
   txt2man-1.7.1-1bl1
 
 Canonical website:
   https://github.com/mlpack/mlpack
 
 Canonical download:
-  https://github.com/mlpack/mlpack/archive/refs/tags/4.4.0.tar.gz
+  https://github.com/mlpack/mlpack/archive/refs/tags/4.5.1.tar.gz
 
 -------------------------------------------
 
 Build instructions:
-  1. unpack mlpack-4.4.0-X-src.tar.xz
+  1. unpack mlpack-4.5.1-X-src.tar.xz
   2. if you use setup to install this src package,
      it will be unpacked under /usr/src automatically
         % cd /usr/src
-        % cygport ./mlpack-4.4.0-X.cygport all
+        % cygport ./mlpack-4.5.1-X.cygport all
 
 This will create:
-  /usr/src/mlpack-4.4.0-X-src.tar.xz
-  /usr/src/mlpack-4.4.0-X.tar.xz
+  /usr/src/mlpack-4.5.1-X-src.tar.xz
+  /usr/src/mlpack-4.5.1-X.tar.xz
 
 -------------------------------------------
 
@@ -102,9 +102,6 @@ Files included in the binary package:
   /usr/include/mlpack/base.hpp
   /usr/include/mlpack/config.hpp
   /usr/include/mlpack/core.hpp
-  /usr/include/mlpack/core/arma_extend/Mat_extra_bones.hpp
-  /usr/include/mlpack/core/arma_extend/SpMat_extra_bones.hpp
-  /usr/include/mlpack/core/arma_extend/arma_extend.hpp
   /usr/include/mlpack/core/arma_extend/serialize_armadillo.hpp
   /usr/include/mlpack/core/cereal/array_wrapper.hpp
   /usr/include/mlpack/core/cereal/is_loading.hpp
@@ -207,19 +204,27 @@ Files included in the binary package:
   /usr/include/mlpack/core/data/tokenizers/tokenizers.hpp
   /usr/include/mlpack/core/data/types.hpp
   /usr/include/mlpack/core/data/types_impl.hpp
-  /usr/include/mlpack/core/dists/diagonal_gaussian_distribution.hpp
-  /usr/include/mlpack/core/dists/diagonal_gaussian_distribution_impl.hpp
-  /usr/include/mlpack/core/dists/discrete_distribution.hpp
-  /usr/include/mlpack/core/dists/discrete_distribution_impl.hpp
-  /usr/include/mlpack/core/dists/dists.hpp
-  /usr/include/mlpack/core/dists/gamma_distribution.hpp
-  /usr/include/mlpack/core/dists/gamma_distribution_impl.hpp
-  /usr/include/mlpack/core/dists/gaussian_distribution.hpp
-  /usr/include/mlpack/core/dists/gaussian_distribution_impl.hpp
-  /usr/include/mlpack/core/dists/laplace_distribution.hpp
-  /usr/include/mlpack/core/dists/laplace_distribution_impl.hpp
-  /usr/include/mlpack/core/dists/regression_distribution.hpp
-  /usr/include/mlpack/core/dists/regression_distribution_impl.hpp
+  /usr/include/mlpack/core/distances/distances.hpp
+  /usr/include/mlpack/core/distances/iou_distance.hpp
+  /usr/include/mlpack/core/distances/ip_metric.hpp
+  /usr/include/mlpack/core/distances/ip_metric_impl.hpp
+  /usr/include/mlpack/core/distances/lmetric.hpp
+  /usr/include/mlpack/core/distances/lmetric_impl.hpp
+  /usr/include/mlpack/core/distances/mahalanobis_distance.hpp
+  /usr/include/mlpack/core/distances/mahalanobis_distance_impl.hpp
+  /usr/include/mlpack/core/distributions/diagonal_gaussian_distribution.hpp
+  /usr/include/mlpack/core/distributions/diagonal_gaussian_distribution_impl.hpp
+  /usr/include/mlpack/core/distributions/discrete_distribution.hpp
+  /usr/include/mlpack/core/distributions/discrete_distribution_impl.hpp
+  /usr/include/mlpack/core/distributions/distributions.hpp
+  /usr/include/mlpack/core/distributions/gamma_distribution.hpp
+  /usr/include/mlpack/core/distributions/gamma_distribution_impl.hpp
+  /usr/include/mlpack/core/distributions/gaussian_distribution.hpp
+  /usr/include/mlpack/core/distributions/gaussian_distribution_impl.hpp
+  /usr/include/mlpack/core/distributions/laplace_distribution.hpp
+  /usr/include/mlpack/core/distributions/laplace_distribution_impl.hpp
+  /usr/include/mlpack/core/distributions/regression_distribution.hpp
+  /usr/include/mlpack/core/distributions/regression_distribution_impl.hpp
   /usr/include/mlpack/core/hpt/cv_function.hpp
   /usr/include/mlpack/core/hpt/cv_function_impl.hpp
   /usr/include/mlpack/core/hpt/deduce_hp_types.hpp
@@ -268,12 +273,6 @@ Files included in the binary package:
   /usr/include/mlpack/core/metrics/bleu_impl.hpp
   /usr/include/mlpack/core/metrics/iou_metric.hpp
   /usr/include/mlpack/core/metrics/iou_metric_impl.hpp
-  /usr/include/mlpack/core/metrics/ip_metric.hpp
-  /usr/include/mlpack/core/metrics/ip_metric_impl.hpp
-  /usr/include/mlpack/core/metrics/lmetric.hpp
-  /usr/include/mlpack/core/metrics/lmetric_impl.hpp
-  /usr/include/mlpack/core/metrics/mahalanobis_distance.hpp
-  /usr/include/mlpack/core/metrics/mahalanobis_distance_impl.hpp
   /usr/include/mlpack/core/metrics/metrics.hpp
   /usr/include/mlpack/core/metrics/non_maximal_suppression.hpp
   /usr/include/mlpack/core/metrics/non_maximal_suppression_impl.hpp
@@ -407,8 +406,8 @@ Files included in the binary package:
   /usr/include/mlpack/core/util/backtrace_impl.hpp
   /usr/include/mlpack/core/util/binding_details.hpp
   /usr/include/mlpack/core/util/conv_to.hpp
-  /usr/include/mlpack/core/util/deprecated.hpp
   /usr/include/mlpack/core/util/ens_traits.hpp
+  /usr/include/mlpack/core/util/first_element_is_arma.hpp
   /usr/include/mlpack/core/util/forward.hpp
   /usr/include/mlpack/core/util/hyphenate_string.hpp
   /usr/include/mlpack/core/util/io.hpp
@@ -418,6 +417,7 @@ Files included in the binary package:
   /usr/include/mlpack/core/util/log_impl.hpp
   /usr/include/mlpack/core/util/mlpack_main.hpp
   /usr/include/mlpack/core/util/nulloutstream.hpp
+  /usr/include/mlpack/core/util/omp_reductions.hpp
   /usr/include/mlpack/core/util/param.hpp
   /usr/include/mlpack/core/util/param_checks.hpp
   /usr/include/mlpack/core/util/param_checks_impl.hpp
@@ -463,6 +463,7 @@ Files included in the binary package:
   /usr/include/mlpack/methods/amf/termination_policies/simple_tolerance_termination.hpp
   /usr/include/mlpack/methods/amf/termination_policies/termination_policies.hpp
   /usr/include/mlpack/methods/amf/termination_policies/validation_rmse_termination.hpp
+  /usr/include/mlpack/methods/amf/update_rules/incremental_iterators.hpp
   /usr/include/mlpack/methods/amf/update_rules/nmf_als.hpp
   /usr/include/mlpack/methods/amf/update_rules/nmf_mult_dist.hpp
   /usr/include/mlpack/methods/amf/update_rules/nmf_mult_div.hpp
@@ -596,6 +597,8 @@ Files included in the binary package:
   /usr/include/mlpack/methods/ann/layer/multi_layer_impl.hpp
   /usr/include/mlpack/methods/ann/layer/multihead_attention.hpp
   /usr/include/mlpack/methods/ann/layer/multihead_attention_impl.hpp
+  /usr/include/mlpack/methods/ann/layer/nearest_interpolation.hpp
+  /usr/include/mlpack/methods/ann/layer/nearest_interpolation_impl.hpp
   /usr/include/mlpack/methods/ann/layer/noisylinear.hpp
   /usr/include/mlpack/methods/ann/layer/noisylinear_impl.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/README.md
@@ -641,8 +644,6 @@ Files included in the binary package:
   /usr/include/mlpack/methods/ann/layer/not_adapted/multiply_constant_impl.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/multiply_merge.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/multiply_merge_impl.hpp
-  /usr/include/mlpack/methods/ann/layer/not_adapted/nearest_interpolation.hpp
-  /usr/include/mlpack/methods/ann/layer/not_adapted/nearest_interpolation_impl.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/pixel_shuffle.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/pixel_shuffle_impl.hpp
   /usr/include/mlpack/methods/ann/layer/not_adapted/positional_encoding.hpp
@@ -818,24 +819,29 @@ Files included in the binary package:
   /usr/include/mlpack/methods/dbscan/ordered_point_selection.hpp
   /usr/include/mlpack/methods/dbscan/random_point_selection.hpp
   /usr/include/mlpack/methods/decision_tree.hpp
-  /usr/include/mlpack/methods/decision_tree/all_categorical_split.hpp
-  /usr/include/mlpack/methods/decision_tree/all_categorical_split_impl.hpp
-  /usr/include/mlpack/methods/decision_tree/all_dimension_select.hpp
-  /usr/include/mlpack/methods/decision_tree/best_binary_numeric_split.hpp
-  /usr/include/mlpack/methods/decision_tree/best_binary_numeric_split_impl.hpp
   /usr/include/mlpack/methods/decision_tree/decision_tree.hpp
   /usr/include/mlpack/methods/decision_tree/decision_tree_impl.hpp
   /usr/include/mlpack/methods/decision_tree/decision_tree_main.cpp
   /usr/include/mlpack/methods/decision_tree/decision_tree_regressor.hpp
   /usr/include/mlpack/methods/decision_tree/decision_tree_regressor_impl.hpp
-  /usr/include/mlpack/methods/decision_tree/gini_gain.hpp
-  /usr/include/mlpack/methods/decision_tree/information_gain.hpp
-  /usr/include/mlpack/methods/decision_tree/mad_gain.hpp
-  /usr/include/mlpack/methods/decision_tree/mse_gain.hpp
-  /usr/include/mlpack/methods/decision_tree/multiple_random_dimension_select.hpp
-  /usr/include/mlpack/methods/decision_tree/random_binary_numeric_split.hpp
-  /usr/include/mlpack/methods/decision_tree/random_binary_numeric_split_impl.hpp
-  /usr/include/mlpack/methods/decision_tree/random_dimension_select.hpp
+  /usr/include/mlpack/methods/decision_tree/fitness_functions/fitness_functions.hpp
+  /usr/include/mlpack/methods/decision_tree/fitness_functions/gini_gain.hpp
+  /usr/include/mlpack/methods/decision_tree/fitness_functions/information_gain.hpp
+  /usr/include/mlpack/methods/decision_tree/fitness_functions/mad_gain.hpp
+  /usr/include/mlpack/methods/decision_tree/fitness_functions/mse_gain.hpp
+  /usr/include/mlpack/methods/decision_tree/select_functions/all_dimension_select.hpp
+  /usr/include/mlpack/methods/decision_tree/select_functions/mult_random_dimension_select.hpp
+  /usr/include/mlpack/methods/decision_tree/select_functions/random_dimension_select.hpp
+  /usr/include/mlpack/methods/decision_tree/select_functions/select_functions.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/all_categorical_split.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/all_categorical_split_impl.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/best_binary_categorical_split.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/best_binary_categorical_split_impl.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/best_binary_numeric_split.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/best_binary_numeric_split_impl.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/random_binary_numeric_split.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/random_binary_numeric_split_impl.hpp
+  /usr/include/mlpack/methods/decision_tree/splits/splits.hpp
   /usr/include/mlpack/methods/decision_tree/utils.hpp
   /usr/include/mlpack/methods/det.hpp
   /usr/include/mlpack/methods/det/det.hpp
@@ -1237,6 +1243,9 @@ Files included in the binary package:
 
 Port Notes:
 
+----- version 4.5.1-1bl1 -----
+Version bump.
+
 ----- version 4.4.0-1bl1 -----
 Version bump.
 

mlpack/mlpack-4.4.0-1bl1.cygport mlpack/mlpack-4.5.1-1bl1.cygport

@@ -1,5 +1,9 @@
 HOMEPAGE="https://github.com/${PN}/${PN}"
 SRC_URI="https://github.com/${PN}/${PN}/archive/refs/tags/${PV}.tar.gz"
+PATCH_URI="
+	https://sources.debian.org/data/main/m/mlpack/4.5.1-1/debian/patches/0001-do-not-disable-optimization.patch
+	https://sources.debian.org/data/main/m/mlpack/4.5.1-1/debian/patches/no-runtime-cython.patch
+"
 
 CATEGORY="Science"
 SUMMARY="Fast, header-only C++ machine learning library"
@@ -26,7 +30,3 @@ CYGCMAKE_ARGS="
 DOCS="
 	*.md
 "
-
-#DIFF_EXCLUDES="
-#	arma_config.hpp
-#"