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Word embeddings from Pubmed and PMC #552

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gccome opened this issue Feb 21, 2019 · 4 comments
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Word embeddings from Pubmed and PMC #552

gccome opened this issue Feb 21, 2019 · 4 comments
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feature A new feature wontfix This will not be worked on

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@gccome
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gccome commented Feb 21, 2019

Can we consider adding word embeddings for biomedical filed? Various related w2v can be downloaded at http://evexdb.org/pmresources/vec-space-models/

More intro can be found at http://bio.nlplab.org

@alanakbik alanakbik added the feature A new feature label Feb 21, 2019
@alanakbik
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Good point! Yes, should be added!

@bharatr21
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@gccome PRs #519 and #503 already added the FlairEmbeddings('pubmed-forward') ,
FlairEmbeddings('pubmed-backward') and ELMoEmbeddings('pubmed') which I'm guessing is already from http://bio.nlplab.org in this link, but support for PMC, Pubmed+PMC and Wikipedia+Pubmed+PMC could be added, at the cost of making FlairEmbeddings or ELMoEmbeddings of those corpora very large (since the last two are more than 2 GB).
@alanakbik Any thoughts on adding support for the last two?

@gccome
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gccome commented Feb 22, 2019

@Bharat123rox thanks for the info! What I meant is that we can call something like WordEmbedding('pubmed'). And I think FlairEmbeddings('pubmed-forward'), FlairEmbeddings('pubmed-backward'), and ELMoEmbeddings('pubmed') don't explicitly use those three word embeddings from bio.nlplab.org. @alanakbik is it correct?

@stale
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stale bot commented Apr 30, 2020

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

@stale stale bot added the wontfix This will not be worked on label Apr 30, 2020
@stale stale bot closed this as completed May 7, 2020
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