Dockerfile

# flywheel/mri-deface
#
# Authorship: Jennifer Reiter
#

FROM ubuntu:trusty
MAINTAINER Flywheel <support@flywheel.io>

# Install dependencies
RUN apt-get update && apt-get -y install \
    unzip \
    gzip \
    wget \
    jq

# Make directories for Flywheel v0 Spec
ENV FLYWHEEL /flywheel/v0
RUN mkdir -p ${FLYWHEEL}
COPY run ${FLYWHEEL}/run
COPY manifest.json ${FLYWHEEL}/manifest.json

# Download mri_deface nd additional files from MGH
RUN wget -N -qO- -O ${FLYWHEEL}/mri_deface.gz \
  ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mri_deface/mri_deface-v1.22-Linux64.gz && \
  gunzip ${FLYWHEEL}/mri_deface.gz && \
  chmod +x /flywheel/v0/mri_deface

RUN wget -N -qO- -O ${FLYWHEEL}/face.gca.gz \
  ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mri_deface/face.gca.gz && \
  gunzip ${FLYWHEEL}/face.gca.gz

RUN wget -N -qO- -O ${FLYWHEEL}/talairach_mixed_with_skull.gca.gz \
  ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mri_deface/talairach_mixed_with_skull.gca.gz && \
  gunzip ${FLYWHEEL}/talairach_mixed_with_skull.gca.gz

ENTRYPOINT ["/flywheel/v0/run"]