Fix Issues with Ubuntu 20.04 #119
Comments
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Here I leave the Dockerfile to easily have this environment and reproduce the same errors and warnings. FROM nvidia/cuda:11.0-devel-ubuntu20.04
WORKDIR /home/
# Basic Tools
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes apt-utils=2.0.2ubuntu0.2 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes sudo=1.8.31-1ubuntu1.1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes ca-certificates=20201027ubuntu0.20.04.1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes g++=4:9.3.0-1ubuntu2 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes gcc=4:9.3.0-1ubuntu2 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes git=1:2.25.1-1ubuntu3 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes make=4.2.1-1.2 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes cmake=3.16.3-1ubuntu1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes vim=2:8.1.2269-1ubuntu5 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
# Libraries & Dependencies
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libboost-all-dev=1.71.0.0ubuntu2 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN git clone https://gitlab.com/libeigen/eigen.git && \
cd eigen && \
git checkout 3.3.9 && \
mkdir build && \
cd build && \
cmake ../ && \
make && \
make install && \
cd ../../ && \
rm -rf eigen/
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libflann-dev=1.9.1+dfsg-9build1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
ENV TZ=Europe
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone && \
apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libvtk7-dev=7.1.1+dfsg2-2ubuntu1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libtinyxml-dev=2.6.2-4build1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes freeglut3-dev=2.8.1-3 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libglm-dev=0.9.9.7+ds-1 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --assume-yes libglew-dev=2.1.0-4 && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN git clone https://github.com/PointCloudLibrary/pcl.git && \
cd pcl/ && \
git checkout pcl-1.9.1 && \
mkdir build && \
cd build && \
cmake ../ -DBUILD_examples=OFF && \
make -l 2.5 && \
make install && \
cd ../../ && \
rm -rf pcl/
# Create non root user in the sudo group.
SHELL ["/bin/bash", "-o", "pipefail", "-c"]
RUN useradd --create-home --shell /bin/bash --gid sudo gpuvoxels
RUN echo 'gpuvoxels:gpuvoxels' | chpasswd
USER gpuvoxels
WORKDIR /home/gpuvoxels |
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Thanks a lot, @AlejoDiaz49 !! |
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Hello everyone,
I am migrating the Framework of my team to Ubuntu 20, there are not really many issues with GPUVoxels, but quite a lot warnings. This my current environment.
Basic Dependencies
Dependencies
Although PCL has newer versions, I have to make many changes in my own code to make it work, I will change it whenever I can this year. So for the moment I will stick with 1.9.1 but the other things I will change them.
Also for CUDA the one that come with nvidia-cuda-toolkit is 10.1 but this one only work with gcc 8 or less, and I don't want to have different version of gcc since the default on Ubuntu 20 is gcc 9 and I already had some issues trying to compile everything
In any case I will try to build a Docker image with this environment and put here the file, so that is easier to reproduce.
Regarding the issues, I only got 2 errors:
CUDA 11
The error is
I tested the merge request #117 and It seems to compile and pass the tests. Will it be merge?
Boost 1.71
The error is
The problem i think is that this only accepts int values now, to test it I put a cast from float to int and it compiled, although is probably not the correct solution. I am not completely sure if the decimals can be ignored
Warnings
There are quite a few warnings, I will put the ones that are repeated the most.
/usr/include/glm/detail/type_vec2.hpp(94): warning: __device__ annotation is ignored on a function("vec") that is explicitly defaulted on its first declaration/usr/include/glm/detail/type_vec2.hpp(94): warning: __host__ annotation is ignored on a function("vec") that is explicitly defaulted on its first declarationhome/alejandro/gpu-voxels/packages/gpu_voxels/src/gpu_voxels/octree/kernels/kernel_Octree.h(149): warning: argument is incompatible with corresponding format string conversion detected during: instantiation of "void gpu_voxels::NTree::kernel_print<branching_factor,level_count,InnerNode,LeafNode>(InnerNode *, InnerNode *, InnerNode *) [with branching_factor=8UL, level_count=15UL, InnerNode=gpu_voxels::NTree::Environment::InnerNodeProb, LeafNode=gpu_voxels::NTree::Environment::LeafNodeProb]" /home/alejandro/gpu-voxels/packages/gpu_voxels/src/gpu_voxels/octree/NTree.hpp(695): here instantiation of "void gpu_voxels::NTree::NTree<branching_factor, level_count, InnerNode, LeafNode>::print() [with branching_factor=8UL, level_count=15UL, InnerNode=gpu_voxels::NTree::Environment::InnerNodeProb, LeafNode=gpu_voxels::NTree::Environment::LeafNodeProb]" /home/alejandro/gpu-voxels/packages/gpu_voxels/src/gpu_voxels/octree/Octree.cu(63): hereIn file included from /usr/include/string.h:495, from /usr/include/c++/9/cstring:42, from /home/alejandro/gpu-voxels/packages/icl_core/src/icl_core_logging/LogOutputStream.cpp:15: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘icl_core::logging::LogOutputStream::LogMessage::LogMessage(const icl_core::TimeStamp&, icl_core::logging::LogLevel, const char*, const char*, size_t, const char*, const char*, const char*, const char*)’ at /home/alejandro/gpu-voxels/packages/icl_core/src/icl_core_logging/LogOutputStream.cpp:659:15: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 257 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));The new version of GCC now shows more warnings and from experience some of them can be real bugs in the code, so is worth looking
Cheers
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