README.md

Awesome Galaxy

A curated list of awesome things related to Galaxy

A community project to get an overview about the Galaxy project

• Resources

  • Core Resources
  • API
  • Job Portal
  • Community
  • Conferences
  • Vimeo Channels
  • Tutorials and Trainings
  • Tools

• Admins

• Virtual Research Environments

Resources

Core

• Official Wiki
• Release Notes
• GitHub Home
• Core Repo
• Roadmap

API

• Quickstart
• API wiki
• API Reference
• Python API bindings
• Java API bindings
• PHP API bindings
• JavaScript API binding
• CLI access to Galaxy
• nebulizer - Command-line utilities to help with managing users, data libraries and tools in a Galaxy instance
• Golang API bindings
• VueJS API bindings

Job Portal

• Galaxy is Hiring

Community

• Twitter
• Official Gitter channel
• IRC channel

Conferences

• GCC
• European Galaxy days

Vimeo Channels

• Vimeo
• YouTube

Tutorials and Trainings

• Users
• Admin
• Developers

Tools

• Intro
• Installing tools
• Building tools
• ToolShed
• Test ToolShed
• usegalaxy.eu tools
• usegalaxy.* tools
• managing tools with Ephemeris

Tool development

• Galaxy Language Server - LSP implementation for Galaxy Tool XML wrappers
• Galaxy Tools (Visual Studio Code Extension) - uses the Galaxy Language Server. Available at:
  • Visual Studio Code Marketplace
  • Open VSX

Tool development repositories

• IUC tools
• Björn Grüning repo
• Galaxy devteam repo
• Peter Cock's repos:
  • blast repo
  • pico repo
  • mira repo
• ENCODE tools
• Biopython repo
• Galaxy Proteomics repo
• Colibread Galaxy Tools
• Greg von Kuster's repo
• EI repo
• AAFC-MBB Canada repo
• Mark Einon's repo
• National Microbiology Laboratory's repo
• Computational Chemistry
• Workflow4Metabolomics repos
• Fiona Brinkman Lab repo

Tool Dependencies

• planemo-monitor
• BioContainers/multi-package-containers
• BioContainers
• Bioconda recipes

Workflows

• Intergalactic Workflow Commision
• Workflow testing

Admins

• gxadmin - shell tools
• Galaxy terraform provider
• Galaxy K8s metrics
• Ansible Docker boot

Deployment

Kubernetes

• Galaxy Helm
• GalaxyKubeMan Helm
• Galaxy CVMFS CSI Helm
• CloudMan Helm
• CloudLaunch Helm-

Virtual Research Environments

Virtual Machines

• Virtual Galaxy Compute Nodes
• Planemo Machine

Docker containers

• Galaxy Docker
• Galaxy Docker compose
• NGS-preprocessing
• GraphClust - RNA structural clustering
• RNA workbench

Cloud infrastructure

• CloudBridge
• CloudLaunch server
• Cloudlaunch UI
• CloudLaunch CLI
• CloudMan server
• CloudMan UI
• Galaxy Cloud Runner
• AWS instance types