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RPY package dependency issue with kcca1 1.0.0 #626

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jennaj opened this issue Aug 9, 2024 · 0 comments
Open

RPY package dependency issue with kcca1 1.0.0 #626

jennaj opened this issue Aug 9, 2024 · 0 comments
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@jennaj
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jennaj commented Aug 9, 2024

toolshed.g2.bx.psu.edu/repos/devteam/kernel_canonical_correlation_analysis/kcca1/1.0.0

Test history (includes tests from both org and eu using the tool test data): https://usegalaxy.org/u/jen-galaxyproject/h/imported-from-archive-test-kernel-canonical-correlation-analysis

ORG reports this summary

Conda dependency seemingly installed but failed to build job environment.

And EU has more details

/usr/local/tools/R/2.11.0/devteam/package_r_2_11_0/5824d2b3bc8b/env.sh: line 17: /usr/local/tools/python/2.7.10/iuc/package_python_2_7_10/b1a672a0df3c/env.sh: No such file or directory
Traceback (most recent call last):
  File "/opt/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/kernel_canonical_correlation_analysis/7a092113eb8c/kernel_canonical_correlation_analysis/kcca.py", line 23, in <module>
    from rpy import *
  File "/usr/local/tools/lagacy_rpy/1.0.3/devteam/package_rpy_1_0_3/82170c94ca7c/lib/python/rpy.py", line 134, in <module>
    """ % RVERSION)
RuntimeError: /usr/local/tools/lagacy_rpy/1.0.3/devteam/package_rpy_1_0_3/82170c94ca7c/lib/python/_rpy2110.so: undefined symbol: PyUnicodeUCS2_AsASCIIString

      RPy module can not be imported. Please check if your rpy
      installation supports R 2.11.0. If you have multiple R versions
      installed, you may need to set RHOME before importing rpy. For
      example:
  
      >>> from rpy_options import set_options
      >>> set_options(RHOME='c:/progra~1/r/rw2011/')
      >>> from rpy import *
@jennaj jennaj added the bug label Aug 9, 2024
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