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Fatal error: Exit code 2 () grep: ./vcf_output/part_.vcf: No such file or directory
The samtools view -H b_0.bam seems to be returning nothing.
samtools view -H b_0.bam
The text was updated successfully, but these errors were encountered:
Could you explain this a little more in depth ? What was the input file, what settings have you chosen ? What version of freebayes are you using ?
Sorry, something went wrong.
The input was picard_MarkDuplicates (bam files) & a reference fasta file.
All settings are default settings.
The version of freebayes is:
Revision: 10:2fb16f415220 from testtoolshed https://testtoolshed.g2.bx.psu.edu/view/devteam/freebayes/2fb16f415220
https://testtoolshed.g2.bx.psu.edu/view/devteam/freebayes/2fb16f415220
Can you reproduce this with a small test file ? What file are you referring to with b_0.bam ?
b_0.bam
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Fatal error: Exit code 2 ()
grep: ./vcf_output/part_.vcf: No such file or directory
The
samtools view -H b_0.bam
seems to be returning nothing.The text was updated successfully, but these errors were encountered: