.travis.yml.broken

# This is a special configuration file to run tests on Travis-CI via
# GitHub notifications when changes are committed.
#
# See http://travis-ci.org/ for details

# This file is heavily inspired by Peter Cock's efforts. See more details at
# http://blastedbio.blogspot.com/2013/09/using-travis-ci-for-testing-galaxy-tools.html

# We need Python 2.6 or 2.7 to run Galaxy but many Galaxy tools also need Java
# to run the simplest way to get that installed is to just start with "java".
# (which will still have a system python installed).

# This is an attempt to run tests for protk-tools by running them in a docker container
# 
# To get docker setup on a travis build we copied the travis yaml from here
#
# https://github.com/rocker-org/rocker/blob/56cb59cc262e9d2c02f9e11cfacab65f0b659c5f/.travis.yml
#


language: java

env:
  global:
    - "HOST_IP=$(/sbin/ifconfig eth0:0 | grep 'inet addr' | awk -F: '{print $2}' | awk '{print $1}')"
    - DOCKER_HOST=tcp://$HOST_IP:2375
    - DOCKER_PORT_RANGE=2400:2500
    - SLIRP_PORTS=$(seq 2375 2500)

before_install:
  - sudo sh -c "wget -qO- https://get.docker.io/gpg | apt-key add -"
  - sudo sh -c "echo deb http://get.docker.io/ubuntu docker main > /etc/apt/sources.list.d/docker.list"
  - echo exit 101 | sudo tee /usr/sbin/policy-rc.d
  - sudo chmod +x /usr/sbin/policy-rc.d
  - sudo apt-get install -y python-virtualenv
  - virtualenv planemo-venv
  - source planemo-venv/bin/activate
  - pip install planemo
  - planemo travis_before_install
  - source ${TRAVIS_BUILD_DIR}/.travis/env.sh # source environment created by planemo

install:
  - sudo apt-get -qqy update
  - sudo apt-get -qqy install lxc lxc-docker-1.4.1 slirp
  - sudo sudo usermod -aG docker "$USER"
  - git clone git://github.com/cptactionhank/sekexe

before_script:
  - "VERBOSE=true sekexe/run 'export DOCKER_CERT_PATH=/var/lib/docker && mount -t tmpfs -o size=8g tmpfs /var/lib/docker && docker -d -H tcp://0.0.0.0:2375' &"
  - "while ! docker info &> /dev/null ; do sleep 1; done"
  - docker pull iracooke/protk-1.4.1

script:
  - docker version
  - docker run iracooke/protk-1.4.1 echo "Working"
  - docker run iracooke/protk-1.4.1 tandem_search.rb


#  - planemo test --install_galaxy --job_config_file .travis.job_conf.xml xtandem/