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pyproject.toml
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pyproject.toml
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[build-system]
build-backend = "setuptools.build_meta"
requires = ["setuptools>=61.0", "wheel>=0.37.1"]
[project]
# https://packaging.python.org/en/latest/specifications/declaring-project-metadata/
name = "phold"
version = "0.3.0" # change VERSION too
description = "Phage Annotations using Protein Structures"
readme = "README.md"
requires-python = ">=3.8, <3.13"
license = {file = "MIT"}
authors = [
{name = "George Bouras", email = "george.bouras@adelaide.edu.au"},
{name = "Susanna Grigson", email = "susie.grigson@gmail.com"}
]
keywords = ["keyword", "are", "cool"]
classifiers = [
"Development Status :: 4 - Beta",
"Environment :: Console",
"License :: OSI Approved :: MIT License",
"Natural Language :: English",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
]
dependencies = [
"click >=8.0.0",
"loguru >=0.5.3",
"pyyaml >=6.0",
"pandas >=1.4.2",
"biopython >=1.80",
"datasets >=2.15",
"requests >=2.25",
"sentencepiece >=0.1.99",
"transformers >=4.34",
"torch >=2.1.2",
"pyrodigal-gv >=0.3.1",
"pyarrow >=14.0.0",
"alive-progress >=3.0.1",
"numpy >=1.20,<2",
"pycirclize >=0.3.1",
"h5py >=3.5"
]
[project.scripts]
phold = 'phold:main'
[project.urls]
"Homepage" = "https://github.com/gbouras13/phold"
"Documentation" = "https://phold.readthedocs.io/en/latest"
[project.optional-dependencies]
lint = [
"isort",
"black"
]
test = ["pytest>=6.2.5",
"pytest-cov >=3.0.0"]
exe = [
"setuptools",
"wheel",
"build",
]
[tool.setuptools]
include-package-data = true
zip-safe = true # This just means it's safe to zip up the bdist