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Implement some initial recipes #388

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ctb opened this issue Apr 16, 2014 · 4 comments
Closed

Implement some initial recipes #388

ctb opened this issue Apr 16, 2014 · 4 comments
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ctb commented Apr 16, 2014

See e.g. http://davis-assembly-masterclass-2013.readthedocs.org/en/latest/titus-notes.html
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ctb commented Apr 16, 2014

Main question: where should these go? Into khmer-protocols, or khmer itself, or ...? I'm thinking khmer itself.

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ctb commented Apr 16, 2014

Also see #387.

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ctb commented Apr 16, 2014

@mr-c suggests they go into khmer as user documentation that is part of some automated tests.

@camillescott suggests IPython Notebooks which @ctb likes because there are output graphs.

@mr-c thinks IPython Notebook would be best when we have a stable Python API.

@qingpeng points out that ipynbs are not good for long-running things.

So, how about minimal extensions or scripting to auto-generate figures that are then included back in the reST document from the recipes?

@mr-c mr-c added this to the unscheduled milestone Sep 2, 2014
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ctb commented Oct 4, 2016

This is done in the khmer-recipes project.

@ctb ctb closed this as completed Oct 4, 2016
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