update_ph_7_3.yml

name: Update ChEBI pH 7.3 mapping 

on:
  workflow_dispatch:
  schedule:
  - cron: '0 4 * * 0'

jobs:
  update:

    runs-on: ubuntu-latest
    container: obolibrary/odkfull:${{ vars.ODK_VERSION }}

    steps:
    - name: Checkout repo
      uses: actions/checkout@v3
      
    - name: Work around https://github.com/peter-evans/create-pull-request/issues/1170
      run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
      
    - name: Update ChEBI pH 7.3 mapping
      run: cd src/ontology && rm ../biochebi/chebi_pH7_3_mapping.tsv && make ../biochebi/chebi_pH7_3_mapping.tsv && cd ../..
    
    - name: Create PR
      uses: peter-evans/create-pull-request@v4
      with:
        title: Update ChEBI pH 7.3 mapping
        branch: update-chebi-pH-7-3