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JVM crash on LSF submit #7

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imprezka88 opened this issue Nov 1, 2019 · 2 comments
Open

JVM crash on LSF submit #7

imprezka88 opened this issue Nov 1, 2019 · 2 comments

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@imprezka88
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Hi,

I'm getting sometimes (not always) JVM crash while trying to submit a job to LSF using this library. There are different exception stacks sometimes but always same line seams to be problematic:

j com.genestack.cluster.lsf.LSFBatch.submit(Lcom/genestack/cluster/lsf/model/SubmitRequest;)Lcom/genestack/cluster/lsf/model/SubmitReply;+0

Attaching log from 2 crashes. Do you maybe know can cause that? And how to fix it?

hs_err_pid4917.log
hs_err_pid6065.log

@vasiliy-bout
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As far as I can see, your logs say that SIGSEGV error happens on a call to strlen function:

# Problematic frame:
# C  [libc.so.6+0x16e901]  __strlen_sse2_pminub+0x11

However I do not see any debug information about the actual call stack. Maybe you can try to compile the native code with debug information to get more detailed call stack information.

@vasiliy-bout
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BTW, while I was looking into the code, I found out that we forgot to release memory for recently added field in SubmitRequest, in #6 . I've fixed this memory leak in #8 , so you might want to try out these changes.

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