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java.lang.OutOfMemoryError: Java heap space error #3
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👍 thanks for the report |
Initial testing shows that for a MAF with 379772 records, the memory usage seen (on dashi-dev) was 37652044 bytes virtual memory (~37GB) and 6463572 bytes resident memory (~6.2G) |
@sheridancbio @thomasyu888 is this issue okay to close for now since Tom will be increasing his node size or is there still work to do? |
t3.medium node was insufficient for mskimpact maf |
Follow up question - did anyone attempt to run the annotator with the jvm argument to increase the heap size? |
I just encountered this error with a mutation file that is 240 MB, and 226870 rows. How do I increase the heap size? I am now on a t3.xlarge machine. 4 cores and 16 GB ram. Annotator logs show:
|
Adding |
Prolly good to add this to the documentation somewhere |
The distribution of variants are:
Some of these are combinations of VCFs, but the largest MAF is 326934 rows. I am currently using a
t3.medium
instance which is 2CPU and 4GB mem.The text was updated successfully, but these errors were encountered: