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Updated Project Outline (markdown)
Clarifying CLI instructions for LyX
Updated Command Line Usage template instructions
Add Docker testing to todos
#41 Clean up hanging and broken links
Clean up hanging links
#41 Update Wiki
Updated Repository Structure (markdown)
Updated Repository Usage (markdown)
Updated _Sidebar (markdown)
Updated Introduction (markdown)
Updated Home (markdown)
Destroyed Coding Principles (markdown)
Destroyed Workflow (markdown)
Destroyed Setup (markdown)
Destroyed Notes and Related Literature (markdown)
Destroyed Paper Production (markdown)
Destroyed Issues (markdown)
Updated Paper Production (markdown)