Prepare Docker container with MATLAB runtime

[agitter]

#16 confirmed that it is possible to run SINGE inside a Docker to container using compiled MATLAB code. Our next step will be to create a general purpose SINGE Docker container. Specific tasks include:

• Create a command line interface Command line interface for SINGE #17
• Release a new version of SINGE
• Compile that new release and host it somewhere stable
• Remove the temp versions of SINGE at https://www.biostat.wisc.edu/~gitter/tmp/
• Create a Docker container using the strategy in Test running SCINGE inside MATLAB Docker container #16 and the new release

[agitter]

CHTC shared the Docker command that HTCondor runs after transferring files, pulling a Docker container, and starting the container:
docker run --user $(id -u):$(id -g) -v $PWD:/scratch -w /scratch username/imagename:tag /path/to/executable

OSG uses Singularity and has a related command: https://gist.github.com/ChristinaLK/3e147f940cd02513c4cdc7c4b04ccfed

We could test these using the compiled SCINGE_Example from #16 while we work on the more general container.

[agitter]

Closed by the v0.4.0 release. We now have a process for pushing temporary compiled MATLAB executables to https://www.biostat.wisc.edu/~gitter/tmp (or some other temporary location) and using them in temporary Docker images. When the code is versioned, we upload the versioned executables to the GitHub release. Then we create a new versioned Docker image from those versioned executables, which is visible from https://hub.docker.com/r/agitter/singe/tags