- Access to the synapse multi-organ dataset: Sign up in the official Synapse website and download the dataset. Convert them to numpy format, clip the images within [-125, 275], normalize each 3D image to [0, 1], and extract 2D slices from 3D volume for training cases while keeping the 3D volume in h5 format for testing cases.
- The directory structure of the Synapse dataset is as follows:
.
└── data
└──Synapse
├── test_vol_h5
│ ├── case0001.npy.h5
│ └── *.npy.h5
└── train_npz
├── case0005_slice000.npz
└── *.npz