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twopi and setRoot -> crash #29

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offerm opened this issue Sep 1, 2020 · 3 comments
Open

twopi and setRoot -> crash #29

offerm opened this issue Sep 1, 2020 · 3 comments
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@offerm
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offerm commented Sep 1, 2020

I'm trying to graph using twopi and sent one of the nodes to be the graph root.
This lead to a crash.

fatal error: unexpected signal during runtime execution
[signal SIGSEGV: segmentation violation code=0x1 addr=0x0 pc=0x52d5a4]

runtime stack:
runtime.throw(0x67e1e8, 0x2a)
        /usr/local/go/src/runtime/panic.go:1116 +0x72
runtime.sigpanic()
        /usr/local/go/src/runtime/signal_unix.go:679 +0x46a

goroutine 1 [syscall]:
runtime.cgocall(0x526ce0, 0xc000045dc8, 0x3)
        /usr/local/go/src/runtime/cgocall.go:133 +0x5b fp=0xc000045d98 sp=0xc000045d60 pc=0x41c90b
github.com/goccy/go-graphviz/internal/ccall._Cfunc_gvLayout(0x9fff70, 0xa01810, 0xa026d0, 0x0)
        _cgo_gotypes.go:2372 +0x4d fp=0xc000045dc8 sp=0xc000045d98 pc=0x4c2b3d
github.com/goccy/go-graphviz/internal/ccall.GvLayout.func1(0xc0000100a8, 0xc0000100b8, 0x676be7, 0x3, 0xc00006e1e0)
        /home/offerm/go/pkg/mod/github.com/goccy/go-graphviz@v0.0.6/internal/ccall/gvc.go:736 +0xd5 fp=0xc000045e10 sp=0xc000045dc8 pc=0x4c69a5
github.com/goccy/go-graphviz/internal/ccall.GvLayout(0xc0000100a8, 0xc0000100b8, 0x676be7, 0x3, 0x4c8827, 0xa01810)
        /home/offerm/go/pkg/mod/github.com/goccy/go-graphviz@v0.0.6/internal/ccall/gvc.go:736 +0x49 fp=0xc000045e48 sp=0xc000045e10 pc=0x4c5ec9
github.com/goccy/go-graphviz/gvc.(*Context).Layout(...)
        /home/offerm/go/pkg/mod/github.com/goccy/go-graphviz@v0.0.6/gvc/gvc.go:29
github.com/goccy/go-graphviz.(*Graphviz).Render(0xc00006e1b0, 0xc0000100c0, 0x676be7, 0x3, 0x6a0ee0, 0xc00006e1e0, 0x0, 0x0)
        /home/offerm/go/pkg/mod/github.com/goccy/go-graphviz@v0.0.6/graphviz.go:83 +0x74 fp=0xc000045ec0 sp=0xc000045e48 pc=0x522584
main.main()
        /home/offerm/github/ln-name-server/graph/test.go:45 +0x3d0 fp=0xc000045f88 sp=0xc000045ec0 pc=0x524300
runtime.main()
        /usr/local/go/src/runtime/proc.go:203 +0x1fa fp=0xc000045fe0 sp=0xc000045f88 pc=0x44befa
runtime.goexit()
        /usr/local/go/src/runtime/asm_amd64.s:1373 +0x1 fp=0xc000045fe8 sp=0xc000045fe0 pc=0x476731

not using twopi or setRoot prevent this error.

source code:

package main

import (
	"bytes"
	"fmt"
	"github.com/goccy/go-graphviz"
	"log"
)

func main() {

	g := graphviz.New()
	graph, err := g.Graph(graphviz.UnDirected)
	if err != nil {
		log.Fatal(err)
	}
	defer func() {
		if err := graph.Close(); err != nil {
			log.Fatal(err)
		}
		g.Close()
	}()
	n, err := graph.CreateNode("n")
	if err != nil {
		log.Fatal(err)
	}
	m, err := graph.CreateNode("m")
	if err != nil {
		log.Fatal(err)
	}
	_, err = graph.CreateNode("l")
	if err != nil {
		log.Fatal(err)
	}

	e, err := graph.CreateEdge("e", n, m)
	if err != nil {
		log.Fatal(err)
	}
	e.SetLabel("e")
	n.SetRoot(true)
	graph.SetLayout("twopi")

	var buf bytes.Buffer
	if err := g.Render(graph, "dot", &buf); err != nil {
		log.Fatal(err)
	}
	fmt.Println(buf.String())

	if err := g.Render(graph, graphviz.PNG, &buf); err != nil {
		log.Fatal(err)
	}

	if err := g.RenderFilename(graph, graphviz.PNG, "/tmp/graph.png"); err != nil {
		log.Fatal(err)
	}

}
@oferbu
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oferbu commented Oct 13, 2021

@offerm did you find a solution or workaround this issue?

@goccy
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goccy commented Oct 18, 2024

@offerm Can the Graphviz's dot command output correctly ?

@goccy goccy added help wanted Extra attention is needed reviewed and removed help wanted Extra attention is needed labels Oct 18, 2024
@goccy
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goccy commented Oct 23, 2024

package main

import (
	"bytes"
	"context"
	"log"
	"os"

	"github.com/goccy/go-graphviz"
)

func main() {
	ctx := context.Background()
	g, _ := graphviz.New(ctx)
	graph, err := g.Graph(graphviz.WithDirectedType(graphviz.UnDirected))
	if err != nil {
		log.Fatal(err)
	}
	defer func() {
		if err := graph.Close(); err != nil {
			log.Fatal(err)
		}
		g.Close()
	}()
	n, err := graph.CreateNodeByName("n")
	if err != nil {
		log.Fatal(err)
	}
	m, err := graph.CreateNodeByName("m")
	if err != nil {
		log.Fatal(err)
	}
	_, err = graph.CreateNodeByName("l")
	if err != nil {
		log.Fatal(err)
	}

	e, err := graph.CreateEdgeByName("e", n, m)
	if err != nil {
		log.Fatal(err)
	}
	e.SetLabel("e")
	n.SetRoot(true)
	graph.SetLayout("twopi")
	var buf bytes.Buffer
	if err := g.Render(ctx, graph, graphviz.PNG, &buf); err != nil {
		log.Fatal(err)
	}
	os.WriteFile("twopi.png", buf.Bytes(), 644)
}

When I ran the above code with output to stderr enabled, I received the following error. I believe similar code would likely not work with the original dot command either.

Assertion failed: sym->id >= 0 && sym->id < topdictsize(obj) (/graphviz/lib/cgraph/attr.c: agxset: 491)

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