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train_sep.py
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from my_model import NeiVar,Recon
from torch.optim import Adam
import torch
import torch_geometric.utils as utils
from sklearn.metrics import roc_auc_score
from transform import NormalizeToOne,standScale,minMaxScale
import numpy as np
from torch_geometric.transforms import NormalizeFeatures
from sklearn.preprocessing import StandardScaler
import argparse
from load_data import load_mat,load_weibo
from torch_geometric.nn import GIN,GAT
import os
os.environ['PYTORCH_CUDA_ALLOC_CONF']="max_split_size_mb:1000"
parser = argparse.ArgumentParser()
parser.add_argument('--data', type=str, default='cora')
# parser.add_argument('--y', type=int, default=1)
parser.add_argument('--epoch', type=int, default=100)
parser.add_argument('--str-epoch', type=int, default=10)
# parser.add_argument('--lr', type=float, default=0.005)
# learning rate for datasets : weibo 0.01, else 0.005
args = parser.parse_args()
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
if args.data == 'weibo':
data = load_weibo()
lr = 0.01
else:
data = load_mat(args.data)
lr = 0.005
y = data.y.numpy()
str_y = data.str_y.numpy()
attr_y = data.attr_y.numpy()
if args.data == 'weibo':
trans = NormalizeFeatures()
data = trans(data)
# pass
# data = NormalizeToOne(data)
# data = standScale(data)
print('norm attr score',roc_auc_score(data.attr_y.numpy(),torch.norm(data.x,dim=-1).numpy()))
print('norm score',roc_auc_score(data.y.numpy(),torch.norm(data.x,dim=-1).numpy()))
data = data.to(device)
print(f'finish load {args.data}')
# y = (data.y==1).cpu().numpy() # binary labels (inl
edge_index = data.edge_index
# edge_index = utils.add_self_loops(edge_index)[0]
if args.data != 'Flickr':
edge_index = utils.add_self_loops(edge_index)[0]
else:
data = standScale(data.to('cpu')).to(device)
input_dim = data.x.size(1)
emb_dim = 128
lr =lr
num_epoch = args.epoch
alpha = 1
# model = CooTrain(input_dim,emb_dim).to(device)
struct_model = NeiVar(input_dim,emb_dim).to(device)
if args.data == 'weibo':
GNN = GAT
else:
GNN = GIN
context_model = Recon(input_dim,emb_dim,GNN).to(device)
str_opt = Adam(struct_model.parameters(),lr=lr,weight_decay=0.0001)
attr_opt =Adam(context_model.parameters(),lr=lr,weight_decay=0.0001)
def add_two_score(score1,score2):
score1 = score1/np.sum(score1)
score2 = score2/np.sum(score2)
return score1 + score2
def std_scale(x):
x = (x - np.mean(x))/np.std(x)
return x
def add_two_score_std(score1,score2):
score1 = std_scale(score1)
score2 = std_scale(score2)
return score1 + score2 * alpha
@torch.no_grad()
def eval_model():
global y
struct_model.eval()
context_model.eval()
score_recon= context_model(data.x,edge_index)
score_var = struct_model(data.x,edge_index)
score_recon,score_var =score_recon.cpu().detach().numpy(),score_var.cpu().detach().numpy()
y = y.reshape(score_recon.shape)
score = add_two_score_std(score_recon,score_var)
return roc_auc_score(y,score),roc_auc_score(str_y,score), \
roc_auc_score(attr_y,score)
def loss_recon_fn(recon_loss):
return torch.mean(recon_loss)
def loss_var_fn(pos_loss,neg_loss):
return torch.mean(pos_loss) - torch.mean(neg_loss)
def train(e):
var_loss = 0
if args.str_epoch > e:
struct_model.train()
neg_edge = utils.negative_sampling(edge_index,num_neg_samples=edge_index.size(1) )
pos_loss = struct_model(data.x,edge_index)
neg_loss= struct_model(data.x,neg_edge)
var_loss = loss_var_fn(pos_loss,neg_loss)
# else:
# print(list(struct_model.parameters()))
context_model.train()
recon_loss = context_model(data.x,edge_index)
recon_loss = loss_recon_fn(recon_loss)
# loss = recon_loss + alpha * var_loss
attr_opt.zero_grad()
recon_loss.backward()
attr_opt.step()
if args.str_epoch > e:
str_opt.zero_grad()
var_loss.backward()
str_opt.step()
return float(recon_loss + alpha * var_loss)
print('begin train')
for e in range(num_epoch):
train_loss = train(e)
test_auc = eval_model()
print(f'Epoch: {e}, trainLoss: {train_loss}, auc: {test_auc[0]:.3f}'
f', str_auc: {test_auc[1]:.3f}, attr_auc: {test_auc[-1]:.3f}')
# with torch.no_grad():
# struct_model.eval()
# context_model.eval()
# score_recon= context_model(data.x,edge_index)
# score_var = struct_model(data.x,edge_index)
# score_recon,score_var =score_recon.cpu().detach().numpy(),score_var.cpu().detach().numpy()
# score = add_two_score_std(score_recon,score_var)
# np.save(f'./results/VGOD_{args.data}',score)