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Details regarding self-distillation #350

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SuperXiang opened this issue Jan 28, 2022 · 0 comments
Open

Details regarding self-distillation #350

SuperXiang opened this issue Jan 28, 2022 · 0 comments
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usage question Further information is requested

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@SuperXiang
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Hi,

Thanks for the great work! I have several questions regarding self-distillation:
#1. What kind of input sequence have you used, uniclust30_yyyy_mm_seed.fasta or uniclust30_yyyy_mm_consensus.fasta (I have fould two types of sequences in UniClust30), and what's the difference between them?

#2. There're uniclust30_XXX_a3m.ffdata and uniclust30_XXX_a3m_db in UniClust30. Have you used these MSAs?

#3. After generating and filtering MSAs and having 350k sequences, did you use bfd and pdb70 to generate related MSAs and templates and go through the inference phase to get the final self-distillation data?

@Augustin-Zidek Augustin-Zidek added the usage question Further information is requested label Jan 28, 2022
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