application.yaml

#
# Copyright 2020-2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#

# See `pipelines/controller/config/application.yaml` for full documentation
# of these options.
# This config is meant to be used by `compose-controller-spark-sql.yaml`.
fhirdata:
  fhirFetchMode: "HAPI_JDBC"
  # 172.17.0.1 is an example docker network interface ip address;
  # `hapi-server` is another docker example where a container with that name is
  # running on the same docker network.
  # fhirServerUrl: "http://172.17.0.1:8091/fhir"
  # fhirServerUrl: "http://hapi-server:8080/fhir"
  dbConfig: "config/hapi-postgres-config_local.json"
  dwhRootPrefix: "/dwh/controller_DWH"
  incrementalSchedule: "0 0 * * * *"
  purgeSchedule: "0 30 * * * *"
  numOfDwhSnapshotsToRetain: 2
  # There is no Questionnaire in our test FHIR server, but it is added to
  # prevent regression of https://github.com/google/fhir-data-pipes/issues/785.
  # TODO: add resource table creation to e2e tests.
  resourceList: "Patient,Encounter,Observation,Questionnaire,Condition,Practitioner,Location,Organization,DiagnosticReport,Immunization,MedicationRequest,PractitionerRole,Procedure"
  numThreads: -1
  autoGenerateFlinkConfiguration: true
  createHiveResourceTables: true
  thriftserverHiveConfig: "config/thriftserver-hive-config_local.json"
  hiveResourceViewsDir: "config/views"
  # structureDefinitionsPath: "config/profile-definitions"
  structureDefinitionsPath: "classpath:/r4-us-core-definitions"
  fhirVersion: "R4"
  rowGroupSizeForParquetFiles: 33554432   # 32mb
  viewDefinitionsDir: "config/views"
  createParquetViews: true
  sinkDbConfigPath: "config/hapi-postgres-config_local_views.json"
  #sinkFhirServerUrl: "http://sink-server:8080/fhir"
  #sinkUserName: "hapi"
  #sinkPassword: "hapi123"
  recursiveDepth: 1

# Enable spring boot actuator end points, use "*" to expose all endpoints, or a comma-separated
# list to expose selected ones
management:
  endpoints:
    web:
      exposure:
        include: health,info,metrics,prometheus,pipeline-metrics