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NoClassDefFoundError for Apache Arrow class when using JDK 17 #2060

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mpeddada1 opened this issue May 23, 2022 · 2 comments · Fixed by #2165
Closed

NoClassDefFoundError for Apache Arrow class when using JDK 17 #2060

mpeddada1 opened this issue May 23, 2022 · 2 comments · Fixed by #2165
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@prash-mi @mpeddada1
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api: bigquery Issues related to the googleapis/java-bigquery API. external This issue is blocked on a bug with the actual product. priority: p2 Moderately-important priority. Fix may not be included in next release. type: bug Error or flaw in code with unintended results or allowing sub-optimal usage patterns.

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@mpeddada1
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mpeddada1 commented May 23, 2022 •
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Running tests in Java 17 is resulting in some failures with Apache Arrow at the moment. A couple of tests are failing with the following log output:

[INFO] Running com.google.cloud.bigquery.it.ITBigQueryTest
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
May 23, 2022 10:13:47 AM com.google.cloud.bigquery.ConnectionImpl highThroughPutRead
INFO: 
 Using BigQuery Read API
Exception in thread "pool-16-thread-1" java.lang.ExceptionInInitializerError
	at org.apache.arrow.memory.ArrowBuf.getDirectBuffer(ArrowBuf.java:228)
	at org.apache.arrow.memory.ArrowBuf.nioBuffer(ArrowBuf.java:223)
	at org.apache.arrow.vector.ipc.ReadChannel.readFully(ReadChannel.java:87)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.readMessageBody(MessageSerializer.java:727)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.deserializeRecordBatch(MessageSerializer.java:363)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.processRows(ConnectionImpl.java:913)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.access$300(ConnectionImpl.java:879)
	at com.google.cloud.bigquery.ConnectionImpl.lambda$processArrowStreamAsync$6(ConnectionImpl.java:855)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:833)
Caused by: java.lang.RuntimeException: Failed to initialize MemoryUtil.
	at org.apache.arrow.memory.util.MemoryUtil.<clinit>(MemoryUtil.java:136)
	... 11 more
Caused by: java.lang.reflect.InaccessibleObjectException: Unable to make field long java.nio.Buffer.address accessible: module java.base does not "opens java.nio" to unnamed module @36aa7bc2
	at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:354)
	at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:297)
	at java.base/java.lang.reflect.Field.checkCanSetAccessible(Field.java:178)
	at java.base/java.lang.reflect.Field.setAccessible(Field.java:172)
	at org.apache.arrow.memory.util.MemoryUtil.<clinit>(MemoryUtil.java:84)
	... 11 more
May 23, 2022 10:13:55 AM com.google.cloud.bigquery.ConnectionImpl highThroughPutRead
INFO: 
 Using BigQuery Read API
Exception in thread "pool-20-thread-1" java.lang.NoClassDefFoundError: Could not initialize class org.apache.arrow.memory.util.MemoryUtil
	at org.apache.arrow.memory.ArrowBuf.getDirectBuffer(ArrowBuf.java:228)
	at org.apache.arrow.memory.ArrowBuf.nioBuffer(ArrowBuf.java:223)
	at org.apache.arrow.vector.ipc.ReadChannel.readFully(ReadChannel.java:87)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.readMessageBody(MessageSerializer.java:727)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.deserializeRecordBatch(MessageSerializer.java:363)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.processRows(ConnectionImpl.java:913)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.access$300(ConnectionImpl.java:879)
	at com.google.cloud.bigquery.ConnectionImpl.lambda$processArrowStreamAsync$6(ConnectionImpl.java:855)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:833)
May 23, 2022 10:14:51 AM com.google.cloud.bigquery.ConnectionImpl lambda$populateBufferAsync$3
WARNING: 
pool-24-thread-3 Interrupted
java.lang.InterruptedException
	at java.base/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1638)
	at java.base/java.util.concurrent.LinkedBlockingDeque.takeFirst(LinkedBlockingDeque.java:485)
	at java.base/java.util.concurrent.LinkedBlockingDeque.take(LinkedBlockingDeque.java:673)
	at com.google.cloud.bigquery.ConnectionImpl.lambda$populateBufferAsync$3(ConnectionImpl.java:548)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:833)

May 23, 2022 10:14:51 AM com.google.cloud.bigquery.ConnectionImpl lambda$parseRpcDataAsync$2
WARNING: 
pool-24-thread-2 Interrupted @ parseRpcDataAsync
java.lang.InterruptedException
	at java.base/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1638)
	at java.base/java.util.concurrent.LinkedBlockingDeque.takeFirst(LinkedBlockingDeque.java:485)
	at java.base/java.util.concurrent.LinkedBlockingDeque.take(LinkedBlockingDeque.java:673)
	at com.google.cloud.bigquery.ConnectionImpl.lambda$parseRpcDataAsync$2(ConnectionImpl.java:507)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:833)

May 23, 2022 10:14:53 AM com.google.cloud.bigquery.ConnectionImpl lambda$runNextPageTaskAsync$1
WARNING: 
pool-24-thread-1 Interrupted @ runNextPageTaskAsync
May 23, 2022 10:16:53 AM com.google.cloud.bigquery.ConnectionImpl highThroughPutRead
INFO: 
 Using BigQuery Read API
Exception in thread "pool-26-thread-1" java.lang.NoClassDefFoundError: Could not initialize class org.apache.arrow.memory.util.MemoryUtil
	at org.apache.arrow.memory.ArrowBuf.getDirectBuffer(ArrowBuf.java:228)
	at org.apache.arrow.memory.ArrowBuf.nioBuffer(ArrowBuf.java:223)
	at org.apache.arrow.vector.ipc.ReadChannel.readFully(ReadChannel.java:87)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.readMessageBody(MessageSerializer.java:727)
	at org.apache.arrow.vector.ipc.message.MessageSerializer.deserializeRecordBatch(MessageSerializer.java:363)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.processRows(ConnectionImpl.java:913)
	at com.google.cloud.bigquery.ConnectionImpl$ArrowRowReader.access$300(ConnectionImpl.java:879)
	at com.google.cloud.bigquery.ConnectionImpl.lambda$processArrowStreamAsync$6(ConnectionImpl.java:855)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:833)
[ERROR] Tests run: 111, Failures: 3, Errors: 0, Skipped: 0, Time elapsed: 440.305 s <<< FAILURE! - in com.google.cloud.bigquery.it.ITBigQueryTest
[ERROR] com.google.cloud.bigquery.it.ITBigQueryTest.testBQResultSetPaginationSlowQuery  Time elapsed: 5.784 s  <<< FAILURE!
java.lang.AssertionError: expected:<300000> but was:<0>
	at org.junit.Assert.fail(Assert.java:89)
	at org.junit.Assert.failNotEquals(Assert.java:835)
	at org.junit.Assert.assertEquals(Assert.java:647)
	at org.junit.Assert.assertEquals(Assert.java:633)
	at com.google.cloud.bigquery.it.ITBigQueryTest.testBQResultSetPaginationSlowQuery(ITBigQueryTest.java:2575)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:568)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
	at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.lang.Thread.run(Thread.java:833)

List of failing tests:

  1. ITBigQueryTest.testBQResultSetPaginationSlowQuery
  2. ITBigQueryTest.testReadAPIConnectionMultiClose
  3. ITBigQueryTest.testReadAPIIterationAndOrder
  4. ITNightlyBigQueryTest.testIterateAndOrder

Steps to reproduce:

  1. sdk use java 17.0.3-oracle
  2. java -version
java version "17.0.3" 2022-04-19 LTS
Java(TM) SE Runtime Environment (build 17.0.3+8-LTS-111)
Java HotSpot(TM) 64-Bit Server VM (build 17.0.3+8-LTS-111, mixed mode, sharing)
  1. mvn verify -Penable-integration-tests

This issue looks related: https://issues.apache.org/jira/browse/ARROW-16472

cc @stephaniewang526, @prash-mi
@product-auto-label product-auto-label bot added the api: bigquery Issues related to the googleapis/java-bigquery API. label May 23, 2022
@meredithslota meredithslota added external This issue is blocked on a bug with the actual product. priority: p2 Moderately-important priority. Fix may not be included in next release. type: bug Error or flaw in code with unintended results or allowing sub-optimal usage patterns. labels May 24, 2022
@mpeddada1 mpeddada1 mentioned this issue May 24, 2022
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@mpeddada1
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Thanks for offering to help with this, @prash-mi! I'm curious to know if you are also able to see this in standard Java 17 in your environment?

@prash-mi prash-mi mentioned this issue Jul 21, 2022
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@mpeddada1 mpeddada1 mentioned this issue Jul 22, 2022
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@mpeddada1
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Fixed with #2165

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@prash-mi prash-mi

@mpeddada1 mpeddada1

Labels
api: bigquery Issues related to the googleapis/java-bigquery API. external This issue is blocked on a bug with the actual product. priority: p2 Moderately-important priority. Fix may not be included in next release. type: bug Error or flaw in code with unintended results or allowing sub-optimal usage patterns.
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fix(java): make field accessible to address Java 17 issue with arrow googleapis/java-bigquery
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@meredithslota @prash-mi @mpeddada1