Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Would you mind to install custom widget called nglview to molecular protein representation in colab notebooks #1049

Closed
alvarosf opened this issue Mar 8, 2020 · 4 comments
Labels

Comments

@alvarosf
Copy link

alvarosf commented Mar 8, 2020

Bug report for Colab: http://colab.research.google.com/.

For questions about colab usage, please use stackoverflow.
Would you mind to install custom widget called nglview to molecular protein representation in colab notebooks

  • Describe the current behavior:
    after installing it with
    pip install nglview
    and ended with
    Building wheels for collected packages: nglview
    Building wheel for nglview (setup.py) ... done
    Created wheel for nglview: filename=nglview-2.7.4-cp36-none-any.whl size=5963883 sha256=eb71e8b122f7f548545877117a18314eb491f0bb8994d5f2a862f7a430e374a7
    Stored in directory: /root/.cache/pip/wheels/bc/32/29/783bb9fc3603d92796663d828e815fd41a1cd9fe9887beb8f1
    Successfully built nglview
    Installing collected packages: nglview
    Successfully installed nglview-2.7.4

import nglview as nv
import ipywidgets
import notebook
print(nv.version)
print (ipywidgets.version)
print (notebook.version)

2.7.4
7.5.1
5.2.2

view = nv.show_pdbid("6vww")
view

Colab does not execute it and keep trying

@tnovikoff
Copy link

Tracking internally at b/151467658

@colaboratory-team
Copy link
Contributor

This would require support of custom ipywidgets, which is not yet available in Colab. See #60 and #498 for details.

@kiranchhetri1
Copy link

#1077

@AaronFeller
Copy link

Is this still being looked at? I'm very interested in it working. Show some love for folks on the bio side.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

5 participants