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Do not add FORMAT in bq_to_vcf flow if there are no samples in the selected regions. #592

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tneymanov opened this issue May 4, 2020 · 0 comments
Open

Do not add FORMAT in bq_to_vcf flow if there are no samples in the selected regions. #592

tneymanov opened this issue May 4, 2020 · 0 comments
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By default, when bq_to_vcf generates a header line in the output vcf file, it adds FORMAT field, proceeded with sample data. However, it is possible that the original VCF file didn't have samples, or the selected regions didn't. In this case, by VCF specs, FORMAT should not be added.
@tneymanov tneymanov self-assigned this May 4, 2020
@tneymanov tneymanov mentioned this issue May 4, 2020
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