doi -> full citation in references.md

[ypar]

Currently, cimr-d recommends data submitters to indicate doi(s) of data or publication(s) to cite when specific submitted data is used. This is then stored in the catalog.txt. These doi should lead to a full citation (.ris, .bib or such likes) in cimr-d references.md.

[cgreene]

The manubot citation infrastructure could be used to fill this in. Are you thinking that the full citation would go somewhere like the selected space in this screenshot?

[ypar]

Yes. doi on the README.md of the processed dir with a link to references.md with a full citation will be best. To fit each file info per line, timestamps may need shortening (e.g. no h m s). I will give it a bit more thought.

[ypar]

Putting this as a reminder to myself. I think the useful format for the README.md in the processed dir would be, e.g.

• data_type
  • [context such as disease or tissue name](aws s3 hyperlink): file_size, [doi](citation file, article link or specific line in cimr-d references.md), [metadata](processed yaml path), updated on ZZZZ

It will be some work trying to pretty-it-up, but it will be more informative than listing file names that tend to be very study-specific.