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When annotation file is given as a relative path, the pipeline terminates with an error similar to this:
Error executing process > 'QC:inferExp (5)'
Caused by:
Not a valid path value: 'relative/path/to/gtf'
Maybe there is an issue with the way the path is passed to the QC subworkflow, since the pipeline runs normally until QC (i.e. index computation and mapping completes successfully).
Pipeline version: 1.3.0 Nextflow version: 23.10.1
The text was updated successfully, but these errors were encountered:
vntasis
changed the title
Error when passing relative path to QC subworkflow
Error when passing annotation as a relative path to QC subworkflow
Jun 13, 2024
When annotation file is given as a relative path, the pipeline terminates with an error similar to this:
Maybe there is an issue with the way the path is passed to the QC subworkflow, since the pipeline runs normally until QC (i.e. index computation and mapping completes successfully).
Pipeline version: 1.3.0
Nextflow version: 23.10.1
The text was updated successfully, but these errors were encountered: