Error when passing annotation as a relative path to QC subworkflow

[vntasis]

When annotation file is given as a relative path, the pipeline terminates with an error similar to this:

Error executing process > 'QC:inferExp (5)'

Caused by:
  Not a valid path value: 'relative/path/to/gtf'

Maybe there is an issue with the way the path is passed to the QC subworkflow, since the pipeline runs normally until QC (i.e. index computation and mapping completes successfully).

Pipeline version: 1.3.0
Nextflow version: 23.10.1