tests.yml

name: tests

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

env:
  CNS_EXEC: ${{ github.workspace }}/bin/cns
  PYTHONPATH: ${{ github.workspace }}/src

jobs:
  unit:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.9]

    steps:
      - uses: actions/checkout@v2
        with:
          submodules: recursive

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt-get install openmpi-bin libopenmpi3 libopenmpi-dev

      - name: install dependencies
        run: |
          python -m pip install pip==23.1.2 setuptools==67.7.2 wheel==0.40.0
          pip install virtualenv==20.23.0 tox==4.5.1.1

      - name: install HADDOCK
        run: |
          pwd
          ls -lsa
          mkdir bin
          touch bin/cns
          cd src/fcc/src
          chmod u+x Makefile
          ./Makefile 2>%1 >/dev/null || true
          cd -
          cd src/fast-rmsdmatrix/src
          chmod u+x Makefile
          make fast-rmsdmatrix
          cd -


      - name: types
        run: tox -e types

      - name: unit tests
        run: tox -e test

      - uses: codacy/codacy-coverage-reporter-action@v1
        if: ${{ github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository }}
        with:
          project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
          coverage-reports: ./coverage.xml

  integration:
    needs: unit
    runs-on: ubuntu-latest
    if: ${{ github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository }}
    strategy:
      matrix:
        python-version: [3.9]

    steps:
      - uses: actions/checkout@v2
        with:
          submodules: recursive

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt-get install openmpi-bin libopenmpi3 libopenmpi-dev

      - name: install dependencies
        run: |
          python -m pip install pip==23.1.2 setuptools==67.7.2 wheel==0.40.0
          pip install virtualenv==20.23.0 tox==4.5.1.1

      - name: install HADDOCK
        run: |
          pwd
          ls -lsa
          mkdir bin
          touch bin/cns
          cd src/fcc/src
          chmod u+x Makefile
          ./Makefile 2>%1 >/dev/null || true
          cd -
          cd src/fast-rmsdmatrix/src
          chmod u+x Makefile
          make fast-rmsdmatrix
          cd -

      - name: install integration dependencies
        run: |
          curl ${{ secrets.CNS_LINK }} -o $CNS_EXEC -s
          chmod +x $CNS_EXEC

      - name: run integration tests
        run: tox -e integration