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Topics in development #5
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1. Salmon/sleuth (Prereq: familiarity with HPC, bash and R)
2. SRA/GEO data download (Prereq: familiarity with HPC and bash)
3. Sequence data QC (fastqc, multiqc, qualimap) (Prereq: familiarity with HPC and bash)
4. IGV for publication worthy figures
5. Advanced bash (awk/sed) (Prereq: familiarity with HPC and bash) #24
6. Gene Annotation in R (ensembldb, annotationhub etc.) (Prereq: familiarity with R)
7. Version Control with Git (Prereq: familiarity with HPC and bash)
8. Version Control with Git using GitKraken
9. Differential Gene Expression (DGE) analysis with DESeq2 (Prereq: familiarity with R)
10. Introduction to Python
11. Sample group clustering with heatmaps and PCA (Principal Component Analysis) (Prereq: familiarity with R)
12. Exploring genome variation using the GEMINI framework (Prereq: familiarity with HPC and bash)
13. Introduction to tidyverse R packages for data visualization (Prereq: familiarity with R)
14. Intro to shell
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