Error in script run_cellsium.sh

[StephanAllgeier]

There is an issue when the run_cellsium.sh script tries to save the resulting images:

OmeroStaticUpload/Dockerfile

Line 22 in 5507dea

RUN bash ./run_cellsium.sh

It is basically a dependency issue in the CellSium project (see modsim/CellSium#2).

A simple solution is to resolve the dependency issue in the local Dockerfile:
Change line 12

OmeroStaticUpload/Dockerfile

Line 12 in 5507dea

RUN conda create -n cellsium python=3.8 cellsium -c modsim -c conda-forge \

as follows:

RUN conda create -n cellsium python=3.8 cellsium roifile=2021.6.6 -c modsim -c conda-forge \