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README.html
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README.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en">
<head>
<meta http-equiv="Content-Type" content="application/xhtml+xml; charset=UTF-8" />
<meta name="generator" content="AsciiDoc 8.6.6" />
<title>scut, cols, and stats</title>
<style type="text/css">
/* Shared CSS for AsciiDoc xhtml11 and html5 backends */
/* Default font. */
body {
font-family: Georgia,serif;
}
/* Title font. */
h1, h2, h3, h4, h5, h6,
div.title, caption.title,
thead, p.table.header,
#toctitle,
#author, #revnumber, #revdate, #revremark,
#footer {
font-family: Arial,Helvetica,sans-serif;
}
body {
margin: 1em 5% 1em 5%;
}
a {
color: blue;
text-decoration: underline;
}
a:visited {
color: fuchsia;
}
em {
font-style: italic;
color: navy;
}
strong {
font-weight: bold;
color: #083194;
}
h1, h2, h3, h4, h5, h6 {
color: #527bbd;
margin-top: 1.2em;
margin-bottom: 0.5em;
line-height: 1.3;
}
h1, h2, h3 {
border-bottom: 2px solid silver;
}
h2 {
padding-top: 0.5em;
}
h3 {
float: left;
}
h3 + * {
clear: left;
}
h5 {
font-size: 1.0em;
}
div.sectionbody {
margin-left: 0;
}
hr {
border: 1px solid silver;
}
p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
ul, ol, li > p {
margin-top: 0;
}
ul > li { color: #aaa; }
ul > li > * { color: black; }
pre {
padding: 0;
margin: 0;
}
#author {
color: #527bbd;
font-weight: bold;
font-size: 1.1em;
}
#email {
}
#revnumber, #revdate, #revremark {
}
#footer {
font-size: small;
border-top: 2px solid silver;
padding-top: 0.5em;
margin-top: 4.0em;
}
#footer-text {
float: left;
padding-bottom: 0.5em;
}
#footer-badges {
float: right;
padding-bottom: 0.5em;
}
#preamble {
margin-top: 1.5em;
margin-bottom: 1.5em;
}
div.imageblock, div.exampleblock, div.verseblock,
div.quoteblock, div.literalblock, div.listingblock, div.sidebarblock,
div.admonitionblock {
margin-top: 1.0em;
margin-bottom: 1.5em;
}
div.admonitionblock {
margin-top: 2.0em;
margin-bottom: 2.0em;
margin-right: 10%;
color: #606060;
}
div.content { /* Block element content. */
padding: 0;
}
/* Block element titles. */
div.title, caption.title {
color: #527bbd;
font-weight: bold;
text-align: left;
margin-top: 1.0em;
margin-bottom: 0.5em;
}
div.title + * {
margin-top: 0;
}
td div.title:first-child {
margin-top: 0.0em;
}
div.content div.title:first-child {
margin-top: 0.0em;
}
div.content + div.title {
margin-top: 0.0em;
}
div.sidebarblock > div.content {
background: #ffffee;
border: 1px solid #dddddd;
border-left: 4px solid #f0f0f0;
padding: 0.5em;
}
div.listingblock > div.content {
border: 1px solid #dddddd;
border-left: 5px solid #f0f0f0;
background: #f8f8f8;
padding: 0.5em;
}
div.quoteblock, div.verseblock {
padding-left: 1.0em;
margin-left: 1.0em;
margin-right: 10%;
border-left: 5px solid #f0f0f0;
color: #888;
}
div.quoteblock > div.attribution {
padding-top: 0.5em;
text-align: right;
}
div.verseblock > pre.content {
font-family: inherit;
font-size: inherit;
}
div.verseblock > div.attribution {
padding-top: 0.75em;
text-align: left;
}
/* DEPRECATED: Pre version 8.2.7 verse style literal block. */
div.verseblock + div.attribution {
text-align: left;
}
div.admonitionblock .icon {
vertical-align: top;
font-size: 1.1em;
font-weight: bold;
text-decoration: underline;
color: #527bbd;
padding-right: 0.5em;
}
div.admonitionblock td.content {
padding-left: 0.5em;
border-left: 3px solid #dddddd;
}
div.exampleblock > div.content {
border-left: 3px solid #dddddd;
padding-left: 0.5em;
}
div.imageblock div.content { padding-left: 0; }
span.image img { border-style: none; }
a.image:visited { color: white; }
dl {
margin-top: 0.8em;
margin-bottom: 0.8em;
}
dt {
margin-top: 0.5em;
margin-bottom: 0;
font-style: normal;
color: navy;
}
dd > *:first-child {
margin-top: 0.1em;
}
ul, ol {
list-style-position: outside;
}
ol.arabic {
list-style-type: decimal;
}
ol.loweralpha {
list-style-type: lower-alpha;
}
ol.upperalpha {
list-style-type: upper-alpha;
}
ol.lowerroman {
list-style-type: lower-roman;
}
ol.upperroman {
list-style-type: upper-roman;
}
div.compact ul, div.compact ol,
div.compact p, div.compact p,
div.compact div, div.compact div {
margin-top: 0.1em;
margin-bottom: 0.1em;
}
tfoot {
font-weight: bold;
}
td > div.verse {
white-space: pre;
}
div.hdlist {
margin-top: 0.8em;
margin-bottom: 0.8em;
}
div.hdlist tr {
padding-bottom: 15px;
}
dt.hdlist1.strong, td.hdlist1.strong {
font-weight: bold;
}
td.hdlist1 {
vertical-align: top;
font-style: normal;
padding-right: 0.8em;
color: navy;
}
td.hdlist2 {
vertical-align: top;
}
div.hdlist.compact tr {
margin: 0;
padding-bottom: 0;
}
.comment {
background: yellow;
}
.footnote, .footnoteref {
font-size: 0.8em;
}
span.footnote, span.footnoteref {
vertical-align: super;
}
#footnotes {
margin: 20px 0 20px 0;
padding: 7px 0 0 0;
}
#footnotes div.footnote {
margin: 0 0 5px 0;
}
#footnotes hr {
border: none;
border-top: 1px solid silver;
height: 1px;
text-align: left;
margin-left: 0;
width: 20%;
min-width: 100px;
}
div.colist td {
padding-right: 0.5em;
padding-bottom: 0.3em;
vertical-align: top;
}
div.colist td img {
margin-top: 0.3em;
}
@media print {
#footer-badges { display: none; }
}
#toc {
margin-bottom: 2.5em;
}
#toctitle {
color: #527bbd;
font-size: 1.1em;
font-weight: bold;
margin-top: 1.0em;
margin-bottom: 0.1em;
}
div.toclevel1, div.toclevel2, div.toclevel3, div.toclevel4 {
margin-top: 0;
margin-bottom: 0;
}
div.toclevel2 {
margin-left: 2em;
font-size: 0.9em;
}
div.toclevel3 {
margin-left: 4em;
font-size: 0.9em;
}
div.toclevel4 {
margin-left: 6em;
font-size: 0.9em;
}
span.aqua { color: aqua; }
span.black { color: black; }
span.blue { color: blue; }
span.fuchsia { color: fuchsia; }
span.gray { color: gray; }
span.green { color: green; }
span.lime { color: lime; }
span.maroon { color: maroon; }
span.navy { color: navy; }
span.olive { color: olive; }
span.purple { color: purple; }
span.red { color: red; }
span.silver { color: silver; }
span.teal { color: teal; }
span.white { color: white; }
span.yellow { color: yellow; }
span.aqua-background { background: aqua; }
span.black-background { background: black; }
span.blue-background { background: blue; }
span.fuchsia-background { background: fuchsia; }
span.gray-background { background: gray; }
span.green-background { background: green; }
span.lime-background { background: lime; }
span.maroon-background { background: maroon; }
span.navy-background { background: navy; }
span.olive-background { background: olive; }
span.purple-background { background: purple; }
span.red-background { background: red; }
span.silver-background { background: silver; }
span.teal-background { background: teal; }
span.white-background { background: white; }
span.yellow-background { background: yellow; }
span.big { font-size: 2em; }
span.small { font-size: 0.6em; }
span.underline { text-decoration: underline; }
span.overline { text-decoration: overline; }
span.line-through { text-decoration: line-through; }
/*
* xhtml11 specific
*
* */
tt {
font-family: monospace;
font-size: inherit;
color: navy;
}
div.tableblock {
margin-top: 1.0em;
margin-bottom: 1.5em;
}
div.tableblock > table {
border: 3px solid #527bbd;
}
thead, p.table.header {
font-weight: bold;
color: #527bbd;
}
p.table {
margin-top: 0;
}
/* Because the table frame attribute is overriden by CSS in most browsers. */
div.tableblock > table[frame="void"] {
border-style: none;
}
div.tableblock > table[frame="hsides"] {
border-left-style: none;
border-right-style: none;
}
div.tableblock > table[frame="vsides"] {
border-top-style: none;
border-bottom-style: none;
}
/*
* html5 specific
*
* */
.monospaced {
font-family: monospace;
font-size: inherit;
color: navy;
}
table.tableblock {
margin-top: 1.0em;
margin-bottom: 1.5em;
}
thead, p.tableblock.header {
font-weight: bold;
color: #527bbd;
}
p.tableblock {
margin-top: 0;
}
table.tableblock {
border-width: 3px;
border-spacing: 0px;
border-style: solid;
border-color: #527bbd;
border-collapse: collapse;
}
th.tableblock, td.tableblock {
border-width: 1px;
padding: 4px;
border-style: solid;
border-color: #527bbd;
}
table.tableblock.frame-topbot {
border-left-style: hidden;
border-right-style: hidden;
}
table.tableblock.frame-sides {
border-top-style: hidden;
border-bottom-style: hidden;
}
table.tableblock.frame-none {
border-style: hidden;
}
th.tableblock.halign-left, td.tableblock.halign-left {
text-align: left;
}
th.tableblock.halign-center, td.tableblock.halign-center {
text-align: center;
}
th.tableblock.halign-right, td.tableblock.halign-right {
text-align: right;
}
th.tableblock.valign-top, td.tableblock.valign-top {
vertical-align: top;
}
th.tableblock.valign-middle, td.tableblock.valign-middle {
vertical-align: middle;
}
th.tableblock.valign-bottom, td.tableblock.valign-bottom {
vertical-align: bottom;
}
/*
* manpage specific
*
* */
body.manpage h1 {
padding-top: 0.5em;
padding-bottom: 0.5em;
border-top: 2px solid silver;
border-bottom: 2px solid silver;
}
body.manpage h2 {
border-style: none;
}
body.manpage div.sectionbody {
margin-left: 3em;
}
@media print {
body.manpage div#toc { display: none; }
}
</style>
<script type="text/javascript">
/*<+'])');
// Function that scans the DOM tree for header elements (the DOM2
// nodeIterator API would be a better technique but not supported by all
// browsers).
var iterate = function (el) {
for (var i = el.firstChild; i != null; i = i.nextSibling) {
if (i.nodeType == 1 /* Node.ELEMENT_NODE */) {
var mo = re.exec(i.tagName);
if (mo && (i.getAttribute("class") || i.getAttribute("className")) != "float") {
result[result.length] = new TocEntry(i, getText(i), mo[1]-1);
}
iterate(i);
}
}
}
iterate(el);
return result;
}
var toc = document.getElementById("toc");
if (!toc) {
return;
}
// Delete existing TOC entries in case we're reloading the TOC.
var tocEntriesToRemove = [];
var i;
for (i = 0; i < toc.childNodes.length; i++) {
var entry = toc.childNodes[i];
if (entry.nodeName == 'div'
&& entry.getAttribute("class")
&& entry.getAttribute("class").match(/^toclevel/))
tocEntriesToRemove.push(entry);
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for (i = 0; i < tocEntriesToRemove.length; i++) {
toc.removeChild(tocEntriesToRemove[i]);
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// Rebuild TOC entries.
var entries = tocEntries(document.getElementById("content"), toclevels);
for (var i = 0; i < entries.length; ++i) {
var entry = entries[i];
if (entry.element.id == "")
entry.element.id = "_toc_" + i;
var a = document.createElement("a");
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a.appendChild(document.createTextNode(entry.text));
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div.className = "toclevel" + entry.toclevel;
toc.appendChild(div);
}
if (entries.length == 0)
toc.parentNode.removeChild(toc);
},
/////////////////////////////////////////////////////////////////////
// Footnotes generator
/////////////////////////////////////////////////////////////////////
/* Based on footnote generation code from:
* http://www.brandspankingnew.net/archive/2005/07/format_footnote.html
*/
footnotes: function () {
// Delete existing footnote entries in case we're reloading the footnodes.
var i;
var noteholder = document.getElementById("footnotes");
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entriesToRemove.push(entry);
}
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noteholder.removeChild(entriesToRemove[i]);
}
// Rebuild footnote entries.
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var spans = cont.getElementsByTagName("span");
var refs = {};
var n = 0;
for (i=0; i<spans.length; i++) {
if (spans[i].className == "footnote") {
n++;
var note = spans[i].getAttribute("data-note");
if (!note) {
// Use [\s\S] in place of . so multi-line matches work.
// Because JavaScript has no s (dotall) regex flag.
note = spans[i].innerHTML.match(/\s*\[([\s\S]*)]\s*/)[1];
spans[i].innerHTML =
"[<a id='_footnoteref_" + n + "' href='#_footnote_" + n +
"' title='View footnote' class='footnote'>" + n + "</a>]";
spans[i].setAttribute("data-note", note);
}
noteholder.innerHTML +=
"<div class='footnote' id='_footnote_" + n + "'>" +
"<a href='#_footnoteref_" + n + "' title='Return to text'>" +
n + "</a>. " + note + "</div>";
var id =spans[i].getAttribute("id");
if (id != null) refs["#"+id] = n;
}
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if (n == 0)
noteholder.parentNode.removeChild(noteholder);
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var href = spans[i].getElementsByTagName("a")[0].getAttribute("href");
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n = refs[href];
spans[i].innerHTML =
"[<a href='#_footnote_" + n +
"' title='View footnote' class='footnote'>" + n + "</a>]";
}
}
}
},
install: function(toclevels) {
var timerId;
function reinstall() {
asciidoc.footnotes();
if (toclevels) {
asciidoc.toc(toclevels);
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reinstall();
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timerId = setInterval(reinstall, 500);
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else
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}
asciidoc.install();
/*]]>*/
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</head>
<body class="article">
<div id="header">
<h1>scut, cols, and stats</h1>
<span id="author">by Harry Mangalam</span><br />
<span id="email"><tt><<a href="mailto:harry.mangalam@uci.edu">harry.mangalam@uci.edu</a>></tt></span><br />
<span id="revnumber">version 0.5,</span>
<span id="revdate">Apr 3rd, 2012</span>
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<h2 id="_summary">Summary</h2>
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<div class="paragraph"><p><em>scut</em> is a short perl script that acts as a better (if slower) <em>cut</em>, and
extracts arbitrary columns to be selected based on regexes you supply. It also has
a <em>join</em> function not unlike the *nix
<a href="http://www-128.ibm.com/developerworks/linux/library/l-textutils.html#9">join</a> command.</p></div>
<div class="paragraph"><p>Being unoptimized perl, it is considerably slower than <em>cut</em> but it can do
things that cut can’t dream of, so if you have 100s of GB of input to slice
& dice, it may be worthwhile to spend some time learning the finer points
of <em>cut</em> and <em>awk</em>, but it you just need to chew thru 100s of MB to GBs of text,
scut may be of interest.</p></div>
<div class="paragraph"><p>In addition to scut, there are 2 other small utilities here.</p></div>
<div class="paragraph"><p><em>cols</em> is a utility to <em>columnize</em> lots of irregularly spaced data,
developed with and often used with scut.</p></div>
<div class="paragraph"><p>Both <em>scut</em> and <em>cols</em> are documented in the included <em>scut_cols_HOWTO.html</em></p></div>
<div class="paragraph"><p><em>stats</em> is a utility to consume all numeric-like data fed to it via STDIN
and emit some useful descriptive statistics. <em>stats -h</em> will give you all
the help you need.</p></div>
<div class="paragraph"><p>eg, calculate the file size distribution in the current directory:</p></div>
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<pre><tt> $ ls -l | cut -c31-42 |stats --dist=2 --x=20 --y=10
or $ ls -l | scut -f=4 |stats --dist=2 --x=20 --y=10
Sum 158401735 158.4 MB total
Number 503 in 503 files
Mean 314913.986083499 average size of file is 315 KB
Median 10204 median size is 10 KB
Mode 1024 mode is 1024 due to ..
NModes 33 .. 33 directories
Min 0 at least 1 empty file
Max 27135470 got a whomper of a file at 2.7 MB
Variance 2903105341782.66 huge variance
Std_Dev 1703850.15238508 etc
SEM 75970.9233614217
Skew 12.1873963279124
Std_Skew 111.588464543135
Kurtosis 235.291925985398
Distribution
X BinSize 0.186431547
Y BinSize 18
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Version 0.5<br />
Last updated 2012-09-20 21:35:07 PDT
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