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Support for label images / bitmask segmentations #842

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keller-mark opened this issue Nov 21, 2024 · 0 comments
Open

Support for label images / bitmask segmentations #842

keller-mark opened this issue Nov 21, 2024 · 0 comments

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@keller-mark
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For supporting label images, in Vitessce we use the standard viv.MultiscaleImageLayer (code) combined with a custom renderSubLayers (code, more code, utils) and custom shaders

This code can be upstreamed into Viv but note that currently things like expression-based and obsSet-based coloring are currently fairly tied to the Vitessce data model. The utilities+shader in particular compress this data a lot and support things like out-of-order and non-consecutive observation IDs.

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