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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<title>StarmapVis | Data</title>
<link href="https://cdn.jsdelivr.net/npm/bootstrap@5.0.0-beta2/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BmbxuPwQa2lc/FVzBcNJ7UAyJxM6wuqIj61tLrc4wSX0szH/Ev+nYRRuWlolflfl" crossorigin="anonymous">
<script src="https://cdn.jsdelivr.net/npm/bootstrap@5.0.0-beta2/dist/js/bootstrap.bundle.min.js" integrity="sha384-b5kHyXgcpbZJO/tY9Ul7kGkf1S0CWuKcCD38l8YkeH8z8QjE0GmW1gYU5S9FOnJ0" crossorigin="anonymous"></script>
</head>
<body style="background-color:#F4F6F6">
<!--top nav-->
<div class="row align-items-start shadow" style="background-color: #154360; color: #F4F6F6">
<div class="col">
<h2 class="p-2 ms-2 fw-light"><a href="index.html" style="text-decoration:none; color: #F4F6F6">StarmapVis</a></h2>
</div>
<div class="col p-1">
<ul class="nav justify-content-end p-2">
<li class="nav-item">
<a class="nav-link fw-light" href="about.html" style="color: white">ABOUT</a>
</li>
<li class="nav-item">
<a class="nav-link fw-light" href="data.html" style="color: white">DATA</a>
</li>
<li class="nav-item">
<a class="nav-link fw-light" href="https://github.com/holab-hku/starmapVR" style="color: white">SOURCE CODE</a>
</li>
</ul>
</div>
</div>
<!--main-->
<div class="container p-2" style="height: auto">
<div class="container" style="height: 15px"></div>
<div class="card card-body shadow">
<h4 class="card-title fw-light">Sample Data 1: <strong>65k Mouse cortex</strong></h4>
<p class="card-text">Mouse visual cortex single-cell RNA-seq data, 65,539 cells, 9 main cell types, visualised in UMAP 3D. <br/>
Paper: <strong>Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex </strong> <br/>
URL: <a href="https://www.nature.com/articles/s41593-017-0029-5">https://www.nature.com/articles/s41593-017-0029-5</a>
</p>
<a href="ForDownload/s1.zip" download class="btn btn-primary">Download</a>
</div>
<div class="container" style="height: 15px"></div>
<div class="card card-body shadow">
<h4 class="card-title fw-light">Sample Data 2: <strong>6k Covid19 fluid immune</strong></h4>
<p class="card-text">6,962 bronchoalveolar lavage fluid immune cells from patients with varying severity of COVID-19
and from healthy people, trajectory path inferred by PAGA. <br/>
Paper: <strong>Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 </strong> <br/>
URL: <a href="https://www.nature.com/articles/s41591-020-0901-9">https://www.nature.com/articles/s41591-020-0901-9</a>
</p>
<a href="ForDownload/s2.zip" download class="btn btn-primary">Download</a>
</div>
<div class="container" style="height: 15px"></div>
<div class="card card-body shadow">
<h4 class="card-title fw-light">Sample Story 1: <strong> 6k Mouse brain </strong></h4>
<p class="card-text">Two Visium spatial transcriptomics dataset of the mouse brain (Sagittal), including anterior (2,695) and posterior (3,355). The data sets are integrated by Scanorama.
<br/>
URL: publicly available from the <a href="https://www.10xgenomics.com/resources/datasets/">10x genomics website</a>.
</p>
<a href="ForDownload/s3.zip" download class="btn btn-primary">Download</a>
</div>
<div class="container" style="height: 15px"></div>
<div class="card card-body shadow">
<h4 class="card-title fw-light">Sample Story 2: <strong>24k Chicken heart</strong></h4>
<p class="card-text">Single-cell transcriptomes across four key Hamburger-Hamilton ventricular development stages (HH21-HH24, HH30-HH31, HH35-HH36, and HH40), 24,356 cells in total, cell types inferred by single cell reference using Seurat anchors.<br/>
Paper: <strong>Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis </strong><br/>
URL: <a href="http://www.nature.com/articles/s41467-021-21892-z">http://www.nature.com/articles/s41467-021-21892-z</a>
</p>
<a href="ForDownload/s4.zip" download class="btn btn-primary">Download</a>
</div>
<div class="container" style="height: 15px"></div>
<div class="container" style="height: 15px"></div>
</div>
<!--foot-->
<div class="row shadow justify-content-center fixed-bottom fw-lighter fs-6 text-muted" style="background-color: white">
Copyright © 2021 Ho Lab at HKU. All Rights Reserved
</div>
</body>
<style>
.btn-primary {
background-color: #154360 !important;
border-color: #154360;
}
.btn:hover,
.btn:active,
.btn:focus{
background-color: #EB984E !important;
border-color: #EB984E !important;
}
input[type="text"] {
box-sizing: border-box;
}
</style>
<script>
</script>
</html>