README.md

Tutorials for using BRIE

There are three data sets used in the BRIE2 manuscript, which can also serve as tutorial materials.

1. Differential splicing events on multiple sclerosis, see msEAE folder

2. Differential momentum genes for RNA velocity on scNT-seq data, see scNTseq folder

3. Differential momentum genes for RNA velocity on scNT-seq data, see dentateGyrus folder

All analysis notebook can be found within the folders, together with links for pre-computed files and command lines.

Already built html format is available in BRIE2's documentation: https://brie.readthedocs.io.