-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathpmo-base.json
3177 lines (3177 loc) · 118 KB
/
pmo-base.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
{
"graphs" : [ {
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/PMO_00000180",
"meta" : {
"definition" : {
"val" : "The concentration of magnesium(2+) when measured in water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_18420"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of magnesium(2+) in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000181",
"meta" : {
"definition" : {
"val" : "The concentration of potassium(1+) when measured in water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_29103"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of potassium(1+) in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000060",
"meta" : {
"definition" : {
"val" : "An investigation identifier which represents a sampling expedition campaign.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "sampling campaign Ex: TARA ocean, Tara arctic OSD 2014, HOT194 etc. Perhaps push to BCO?"
} ]
},
"type" : "CLASS",
"lbl" : "sampling expedition identifier"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000184",
"meta" : {
"definition" : {
"val" : "The concentration of manganese(2+) when measured in water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_29035"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of manganese(2+) in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000063",
"type" : "CLASS",
"lbl" : "Summary File Name"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000185",
"meta" : {
"definition" : {
"val" : "A measure which describes the enumeration of aggregated prokaryotes.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for prokaryote, and push to ENVO, PATO, BCO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "enumeration of prokaryote aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000182",
"meta" : {
"definition" : {
"val" : "The concentration of sodium(1+) when measured in water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_29101"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of sodium(1+) in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000061",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://edamontology.org/data_2099"
} ]
},
"type" : "CLASS",
"lbl" : "Name"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000183",
"meta" : {
"definition" : {
"val" : "The concentration of sulfate when measured in water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_16189"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of sulfate in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000062",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://edamontology.org/data_1050"
} ]
},
"type" : "CLASS",
"lbl" : "File Name"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000067",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps consider for deprication."
} ]
},
"type" : "CLASS",
"lbl" : "navigation device"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000188",
"meta" : {
"definition" : {
"val" : "A process during which prokaryotic cells produce biomass.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "prokaryotic production"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000100",
"meta" : {
"definition" : {
"val" : "A multi-species collection of planktonic organisms which have been aggregrated as a result of a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Clean and add to PCO or BCO."
} ]
},
"type" : "CLASS",
"lbl" : "plankton aggregate"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000189",
"meta" : {
"definition" : {
"val" : "A prokaryotic production process during which cells produce leucine containing biomass.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "prokaryotic leucine production"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000068",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps consider for deprication."
} ]
},
"type" : "CLASS",
"lbl" : "global positioning system device"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000101",
"meta" : {
"definition" : {
"val" : "A plankton aggregate which comprises aggregated nanoplankton and microplankton.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "add axioms to link to http://purl.obolibrary.org/obo/PMO_00000106 and http://purl.obolibrary.org/obo/PMO_00000105"
} ]
},
"type" : "CLASS",
"lbl" : "nanoplankton and microplankton aggregate"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000186",
"meta" : {
"definition" : {
"val" : "The concentration of bromide when measured in liquid water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "http://purl.obolibrary.org/obo/CHEBI_15858"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of bromide in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000065",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Consider for deprication."
} ]
},
"type" : "CLASS",
"lbl" : "sampling expedition project investigation and leg identifier"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000066",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps consider for deprication. Maybe same as superclass samplping expedition identifier."
} ]
},
"type" : "CLASS",
"lbl" : "repeated expedition location identifier"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000187",
"meta" : {
"comments" : [ "An electrical conduction unit which is equal to one microsiemen per centimeter." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to UO."
} ]
},
"type" : "CLASS",
"lbl" : "microsiemens per centimeter"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000179",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "The concentration of calcium(2+) when measured in water."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "use CHEBI calcium(2+) http://purl.obolibrary.org/obo/CHEBI_29108"
} ]
},
"type" : "CLASS",
"lbl" : "concentration of calcium(2+) in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000058",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "sampling campaign, perhaps useful perhaps depricate."
} ]
},
"type" : "CLASS",
"lbl" : "sampling expedition"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000059",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps consider for deprication."
} ]
},
"type" : "CLASS",
"lbl" : "sampling expedition leg"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000191",
"meta" : {
"definition" : {
"val" : "The mass density of some liquid water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO using E-A pattern."
} ]
},
"type" : "CLASS",
"lbl" : "mass density of liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000070",
"meta" : {
"definition" : {
"val" : "A data item which indicates the publication date of a dataset.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps could make more general just \"publication date\" and not have it be specific to a dataset."
} ]
},
"type" : "CLASS",
"lbl" : "data publication date"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000071",
"meta" : {
"definition" : {
"val" : "A length which inheres in a DNA sequence datum namely the number of basepairs in the sequence.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps useful semantic to push to OBI?"
} ]
},
"type" : "CLASS",
"lbl" : "length of DNA sequence data"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000192",
"meta" : {
"definition" : {
"val" : "A mass unit density which is equal to mass of an object in grams divided by the volume in cubic meters.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to UO."
} ]
},
"type" : "CLASS",
"lbl" : "gram per cubic meter"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000190",
"meta" : {
"definition" : {
"val" : "A mass density rate unit which is equal to one picomol per litre per hour.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "picomolar per hour"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000074",
"meta" : {
"definition" : {
"val" : "A device which is used to collect a specimen during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Definately should push to OBI or BCO."
} ]
},
"type" : "CLASS",
"lbl" : "specimen collection device"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000075",
"meta" : {
"definition" : {
"val" : "A textual entity that is about any of the aspects of an investigation worth noting.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://purl.obolibrary.org/obo/OBI_0001898"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Reimport the OBI term after the axiom has been fixed, as it's currently failing when run with the ELK reasoner."
} ]
},
"type" : "CLASS",
"lbl" : "comment on investigation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000072",
"type" : "CLASS",
"lbl" : "file size"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000193",
"meta" : {
"definition" : {
"val" : "A turbidity unit in which a nephelometer is used to measure scattered light from a liquid water sample at a 90-degree angle from the incident light.",
"xrefs" : [ "https://en.wikipedia.org/wiki/Turbidity", "https://support.hach.com/app/answers/answer_view/a_id/1000336/~/what-is-the-difference-between-the-turbidity-units-ntu%2C-fnu%2C-ftu%2C-and-fau%3F-what" ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to UO."
} ]
},
"type" : "CLASS",
"lbl" : "nephelometric turbidity unit"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000073",
"meta" : {
"definition" : {
"val" : "A measurment datum which describes the number of locations sequenced witin a DNA sequence.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Unsure if this is worth pushing to IAO or BCO."
} ]
},
"type" : "CLASS",
"lbl" : "number of locations sequenced within a DNA sequence"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000111",
"meta" : {
"definition" : {
"val" : "An aggregate of nitrogen and carbon-containing molecules derived from an environmental material which pass through a filter during a specimen collection process.",
"xrefs" : [ "https://www.sciencedirect.com/topics/earth-and-planetary-sciences/dissolved-organic-nitrogen" ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "dissolved organic nitrogen"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000078",
"meta" : {
"definition" : {
"val" : "A measurement datum that is the measure of the longitude coordinate of a site at the end of a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to BCO."
} ]
},
"type" : "CLASS",
"lbl" : "longitude coordinate measurement datum stop"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000112",
"meta" : {
"definition" : {
"val" : "An aggregate of organic nitrogen and carbon-containing molecules derived from an environmental material which are too large to pass through a filter during a specimen collection process.",
"xrefs" : [ "https://www.sciencedirect.com/topics/earth-and-planetary-sciences/particulate-organic-nitrogen" ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "particulate organic nitrogen"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000079",
"meta" : {
"definition" : {
"val" : "A measurement datum that is the measure of the latitude coordinate of a site at the end of a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to BCO."
} ]
},
"type" : "CLASS",
"lbl" : "latitude coordinate measurement datum stop"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000076",
"meta" : {
"definition" : {
"val" : "A measurement datum that is the measure of the starting latitude coordinate of a site during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to BCO."
} ]
},
"type" : "CLASS",
"lbl" : "latitude coordinate measurement datum start"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000110",
"meta" : {
"definition" : {
"val" : "An object aggregate which is composed primarily of nitrogen molecules.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Link to CHEBI nitrogen molecule."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Clean and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "aggregation of nitrogen molecules"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000077",
"meta" : {
"definition" : {
"val" : "A measurement datum that is the measure of the starting longitude coordinate of a site during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to BCO."
} ]
},
"type" : "CLASS",
"lbl" : "longitude coordinate measurement datum start"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000105",
"meta" : {
"definition" : {
"val" : "A portion of planktonic material which is comprised of plankton which range in size between 20 and 200 micrometers.",
"xrefs" : [ "https://en.wikipedia.org/wiki/Plankton#Size_groups" ]
},
"synonyms" : [ {
"pred" : "hasNarrowSynonym",
"val" : "Microplankton",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "microplankton material"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000102",
"meta" : {
"definition" : {
"val" : "An aggregate of organic carbon-containing molecules derived from an environmental material which pass through a filter during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Clean and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "dissolved organic carbon"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000069",
"meta" : {
"definition" : {
"val" : "A device which is used to prepare a genomic library.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Could be useful semantic to push to OBI."
} ]
},
"type" : "CLASS",
"lbl" : "genomic library preparation device"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000103",
"meta" : {
"definition" : {
"val" : "An aggregate of organic carbon-containing molecules derived from an environmental material which are too large to pass through a filter during a specimen collection process.",
"xrefs" : [ ]
},
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "suspended organic carbon",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Clean and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "particulate organic carbon"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000108",
"meta" : {
"definition" : {
"val" : "An aggregation of carbon molecules which constitute biomass accumulated during an autotrophic biomass formation process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "link to http://purl.obolibrary.org/obo/PMO_00000107, clean and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "primary productivity carbon"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000109",
"meta" : {
"definition" : {
"val" : "An object aggregate which is composed primarily of carbon molecules.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Link to CHEBI carbon molecule"
} ]
},
"type" : "CLASS",
"lbl" : "aggregation of carbon molecules"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000106",
"meta" : {
"definition" : {
"val" : "A portion of planktonic material which is comprised of plankton which range in size between 2 and 20 micrometers.",
"xrefs" : [ "https://en.wikipedia.org/wiki/Plankton#Size_groups" ]
},
"synonyms" : [ {
"pred" : "hasNarrowSynonym",
"val" : "Nanoplankton",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "https://en.wikipedia.org/wiki/Plankton#Size_groups"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "nanophytoplankton material"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000107",
"meta" : {
"definition" : {
"val" : "A process during which an organism produces biomass from abiotic components using an autotrophic growth process.",
"xrefs" : [ ]
},
"synonyms" : [ {
"pred" : "hasBroadSynonym",
"val" : "primary productivity",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "link to PMO_00000108, and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "autotrophic biomass formation process"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000162",
"meta" : {
"definition" : {
"val" : "A measure which describes the enumeration of aggregated heterotrophic prokaryotes.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for heterotrophs, and push to PATO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "enumeration of heterotrophic prokaryote aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000163",
"meta" : {
"definition" : {
"val" : "An aggregate of carbon-containing molecules which were derived from an autotrophic biomass formation process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "autotrophic organism biomass carbon aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000160",
"meta" : {
"definition" : {
"val" : "A measure which describes the enumeration of aggregated Synechococcus.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for Synechococcus, and push to PATO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "enumeration of Synechococcus aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000161",
"meta" : {
"definition" : {
"val" : "A measure which describes the enumeration of aggregated picoeukaryotes.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for picoeukaryotes, and push to PATO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "enumeration of picoeukaryote aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000166",
"meta" : {
"definition" : {
"val" : "A material sample which is obtained from an environment in order to be a representative of such environment.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Imporve and add to OBI or BCO."
} ]
},
"type" : "CLASS",
"lbl" : "sample from environment"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000045",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://edamontology.org/data_0842"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Figure out how to import EDAM."
} ]
},
"type" : "CLASS",
"lbl" : "Identifier"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000167",
"meta" : {
"definition" : {
"val" : "A sample from environment which is obtained from an aquatic environment in order to be a representative of such aquatic environment.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Imporve and add to OBI or BCO."
} ]
},
"type" : "CLASS",
"lbl" : "sample from aquatic environment"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000046",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://edamontology.org/data_1047"
} ]
},
"type" : "CLASS",
"lbl" : "URI"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000164",
"meta" : {
"definition" : {
"val" : "An object aggregate which is composed primarily of silicon molecules.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Link to CHEBI clean and add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "aggregation of silicon molecules"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000165",
"meta" : {
"definition" : {
"val" : "An aggregate of silica-containing molecules derived from an environmental material which are too large to pass through a filter during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "particulate silica"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000044",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Figure out how to import EDAM."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "http://edamontology.org/data_0006"
} ]
},
"type" : "CLASS",
"lbl" : "Data"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000038",
"meta" : {
"xrefs" : [ {
"val" : "https://www.omega.com/temperature/Z/pdf/z186-193.pdf"
} ],
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "ITS-90",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Depricate this is not actually a unit, just a scale to convert between Kelvin and Celcius at various pressures."
} ],
"deprecated" : true
},
"type" : "CLASS",
"lbl" : "international temperature scale of 1990 unit"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000159",
"meta" : {
"definition" : {
"val" : "A measure which describes the enumeration of aggregated Prochlorococcus.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for Procholorococcus, and push to PATO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "enumeration of Prochlorococcus aggregation"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000036",
"meta" : {
"definition" : {
"val" : "A unit which is a standard measure of salinity.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to UO."
} ]
},
"type" : "CLASS",
"lbl" : "salinity unit"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000157",
"meta" : {
"definition" : {
"val" : "The concentration of 19'-hexanoyloxyfucoxanthin when measured in liquid water.",
"xrefs" : [ "https://pubchem.ncbi.nlm.nih.gov/compound/6443044" ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Need to request 19'-hexanoyloxyfucoxanthin in CHEBI, then can add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "concentration of 19'-hexanoyloxyfucoxanthin in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000158",
"meta" : {
"definition" : {
"val" : "A measure, which refers to an aggregation of organisms.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Pattern similar to http://purl.obolibrary.org/obo/IDOMAL_0000428"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add axiom for organisms, and push to PATO or ECOCORE."
} ]
},
"type" : "CLASS",
"lbl" : "measure relating to enumeration of aggregation of organisms"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000037",
"meta" : {
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "PSU",
"xrefs" : [ ]
}, {
"pred" : "hasExactSynonym",
"val" : "PSS-78",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps don't add to UO. \n\nAccording to http://www.salinityremotesensing.ifremer.fr/sea-surface-salinity/definition-and-units it is equivalent to per thousand."
} ]
},
"type" : "CLASS",
"lbl" : "practical salinity unit"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000170",
"meta" : {
"definition" : {
"val" : "A portion of planktonic material which is comprised of plankton which range in size between 0.2 and 2 micrometers.",
"xrefs" : [ "https://en.wikipedia.org/wiki/Plankton#Size_groups" ]
},
"synonyms" : [ {
"pred" : "hasNarrowSynonym",
"val" : "Picoplankton",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "picoplankton material"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000173",
"meta" : {
"comments" : [ "Term replaced by ENVO:3200059" ],
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/ENVO_3200059"
} ],
"deprecated" : true
},
"type" : "CLASS",
"lbl" : "DEPRECATED concentration of urea in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000052",
"meta" : {
"definition" : {
"val" : "A depth of water quality which inheres in a bearer by virtue of such bearer being the maximum depth of water collected during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps this term should be pushed to BCO or OBI? Or handled with two semantics a maximum quality and ENVO: depth of water."
} ]
},
"type" : "CLASS",
"lbl" : "maximum depth of water collected during specimen collection process"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000053",
"meta" : {
"definition" : {
"val" : "A pressure of water quality which inheres in a bearer by virtue of such bearer being the maximum pressure of water collected during a specimen collection process.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Perhaps this term should be pushed to BCO or OBI? Or handled with two semantics a maximum quality and ENVO: pressure of water."
} ]
},
"type" : "CLASS",
"lbl" : "maximum pressure of water collected during specimen collection process"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000174",
"meta" : {
"definition" : {
"val" : "The concentration of carbon dioxide when measured in liquid water.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO via design pattern."
} ]
},
"type" : "CLASS",
"lbl" : "concentration of carbon dioxide in liquid water"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000050",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "consider for deprication."
} ]
},
"type" : "CLASS",
"lbl" : "number of specimen collection devices employed"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000171",
"meta" : {
"definition" : {
"val" : "A portion of planktonic material which is comprised of plankton which are of sizes less than 0.22 micrometers.",
"xrefs" : [ "https://en.wikipedia.org/wiki/Plankton#Size_groups" ]
},
"synonyms" : [ {
"pred" : "hasNarrowSynonym",
"val" : "Femtoplankton",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Add to ENVO."
} ]
},
"type" : "CLASS",
"lbl" : "femtoplankton material"
}, {
"id" : "http://purl.obolibrary.org/obo/PMO_00000051",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Consider for deprication."