Docker Image for iScFlow
Docker image for iScFlow pipeline for single cell analysis on Ubuntu base
This is a work in process as we test and optimize the pipeline
We have currently locked the image to R version 3.5.2
Final Packages include:
- scPipe
- seurat
- fastqc (fastqcr)
- trimgalore (trim_fastq)
- oposSOM
- scMatch
As well as the required tools to benchmark, rapid prototype, and tweak scripts.
See iScFlow package for more details
Current Working List:
- Editing & Prototype Tools (emacs, git, nodejs, make, grep, zip, etc)
- Python 2.7
- R 3.5.2 & Tools
- Bioconductor
- ggplot2, tiddyverse, data.table, Matrix
- fastqcr
- scPipe
- seurat
- scMatch
- Wes Wilson - Creator and maintainer of the image for iScFlow / Developer for iScFlow
- Bhavna Hurgobin - Creator & Lead Developer of iScFlow
See also the list of contributors who participated in this project.