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NEWS.md

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icesSAG 1.5.0 (2024-10-24)

  • Update all functions to point to new API.
  • Remove token authentication, and move to JWT tokens via icesConnect.
  • Introduce the use of caching for some functions to reduce API requests.
  • export GET and POST request functions.
  • Depreciate redundant graph functions (e.g. YSSBR).
  • New functions to set package options: sag_use_token() and sag_messages().
  • Link messages package option to quiet argument in get requests.
  • GetListStocks now accepts a stock and modifiedAfter arguments for additional server side filtering.
  • Remove file upload capability.

icesSAG 1.4.1 (2023-05-11)

  • bug fix for stockInfo() and documentation.

icesSAG 1.4.0 (2022-02-17)

  • add new function getCustomColumns().

icesSAG 1.3-8 (2019-10-29)

  • Display warning if stock name contains – and not -, and quietly fix.

icesSAG 1.3-7 (2019-05-14)

  • Allow upload to contiue if errors found by DATSU - gives warning, not error.
  • Add function to parse stock status table values due to change in web service XML data structure.
  • Fix name in upload format specification CatchLandingsUnits.

icesSAG 1.3-6 (2019-03-13)

  • Fixed bug in parsing of XML tables. Function now reads the WSDL data that is included as an internal data set (list of variable names)
  • Set all examples to dontrun
  • code now checked against lintr for consistent style

icesSAG 1.3-5 (2018-06-08)

  • added function getStockSourceData() to download the XML file that was origionally uploaded.

icesSAG 1.3-4 (2018-05-01)

  • added function getLatestStockAdviceList()
  • export print methods for sag.list and sag.data.frame for fishdata and fishinfo objects used to upload data.
  • improved personal access token logic
  • improved help documentation
  • Added StockCategory, Purpose, ModelType, ModelName to upload functions
  • Added filter for assessment Purpose in getSAG()
  • fixed bugs arising from changes to xml2 package
  • fixed bug arsing from change in ICES Datsu web service

icesSAG 1.3-2 (2017-05-06)

  • User sets SAG database access token in a ~/.Renviron_SG file.
  • Addressed non CRAN compliant behaviour: user must create .Renviron file themselves.

icesSAG 1.3-1 (2017-05-04)

  • Improved createSAGxml() internal data validation.

icesSAG 1.3-0 (2017-04-05)

  • Added function uploadStock() to upload data to SAG database via uploadXMLFile(). The functions readSAGxml() and createSAGxml() convert data to and from SAG XML upload format.
  • Added functions stockInfo() and stockFishdata() to prepare data for upload. Uploads require user access tokens, available from the main SAG website.
  • Added function getStockStatusValues() to get stock status table, and getYSBRSummaryTable() to get yield and SSB per recruit.
  • Added functions getSAGSettings() and setSAGSettings() to get and set graph settings. The function getSAGTypeGraphs() lists the SAG graph types.
  • Renamed findKey() to findAssessmentKey().

icesSAG 1.2-1 (2017-03-24)

  • Hotfix release to match changes in the underlying web service, regarding assessment keys.

icesSAG 1.2-0 (2016-12-05)

  • Added functions get*Graph() to fetch standard graph images, with a corresponding plot() method. The convenience function getSAGGraphs() fetches four commonly used graphs.
  • Added argument 'regex' to findKey().
  • Fixed bug in getSAG() when different column names appear in stock summaries and combine = TRUE.
  • Removed dependency on RCurl and XML by using base functions to download and parse data.

icesSAG 1.1-0 (2016-10-29)

  • Added function findKey() to look up a unique stock list key.
  • Added function getSAG() to import summary results and reference points, without finding a lookup key first.
  • Changed argument in functions getSummaryTable() and getFishStockReferencepoints() from 'year' to 'key'.
  • Improved XML parsing, so both leading and trailing white space is removed.
  • Improved XML parsing, so "" and "NA" is converted to NA.
  • Improved XML parsing, so data frame columns are automatically coerced to the appropriate storage mode (character, numeric, integer).

icesSAG 1.0-0 (2016-08-09)

  • Initial release, with functions getListStocks(), getSummaryTable(), and getFishStockReferencePoints().