MorphoLibJ 1.4.0

Major changes

• Large refactoring of the "Analyze" plugins: new plugins "Analyze Regions" (that replaces RegionMorphometry) and "Analyze Regions 3D", that gather most 2D or 3D features, and enhancement in more specific plugins
• add computation of Feret diameters
• add computation of Largest Inscribed Disk
• add computation of Oriented Bounding Box
• update computation of distance maps for 3D label images
• update label selection plugin
• updated the user manual

Code changes

• introduction of the new "geometry" package
• most region analysis operators implements the "Algo" interface
• Introduces IntrinsicVolumes2D/3D as replacement of GeometricMeasures2D/3D

The MorphoLibJ_-1.4.0-tables.jar also contains experimental features about table manipulations, corresponding to the "table" branch.

Release v1.3.6

Major changes:

• Fix bug on some intensity measures calculation.

Release v1.3.5

Major changes:

• Intensity Measures 2D/3D: bug fixes and speed up calculations.
• Morphological Segmentation: remove ROIs after mergin labels.
• Extended Minima Watershed: add methods with output type as parameter.

Release v1.3.4

Major changes:

• Morphological Segmentation: it now works with real values of dynamic and offers internal and external gradient options.
• Interactive Watershed: make sure ROIs from manager work in 2D and 3D.
• Fix bugs in GeodesicDiameter.
• Make sure the ellipsoid and ball strels maintain the color model.
• Add computation of distance maps for label images.
• Add plugin and methods to remap labels.
• Move RegionAdjacencyGraph to "label" package.
• Label Edition: output both original and edited images, and delete ROIs after merging or removing labels.
• Keep same LUT after selecting labels.
• Computation of geodesic diameter now takes into account the spatial calibration.
• Add a convenience static class to append ResultsTable objects.
• Add a Label Overlap Measures plugin to calculate overlap agreement between label images.
• Intensity measures: include neighbors sd, max, min, median, mode, skewness and kurtosis.

Release v1.3.3

Major changes:

• Create interactive plugin for marker-controlled watershed.
• Fix morphological filtering of floating point images.
• Run connected components with a 32-bit output.
• Add support to morphological reconstruction on RGB images.
• Avoid possible bugs when zooming in small images.

Release v1.3.2

Major changes:

• Add geodesic diameter 3d plugin.
• Update LabelToValuePlugin.java to keep spatial calibration.
• Fix bug in 3D distance transform (only for 3x3x3 neighborhood).
• Fix bug in Connected Components labeling.
• Fix potential bug on border of morphological filtering with diamond structuring element.

MorphoLibJ 1.3.1

MorphoLibJ 1.3.1.

This version introduces 3D geodesic distance transform, 3D geodesic diameter, and display of Region Adjacency Graphs. It also fixes several bugs, and ensures compatibility with java 1.6.

MorphoLibJ 1.3.0

MorphoLibJ library v1.3.0
released Aug. 25, 2016

New features:

• Interactive tool for watershed distance transform (2D/3D)
• Interactive tool for morphological reconstruction using manual markers (2D/3D)
• Directional filtering

Enhancements:

• longest geodesic paths can be exported as ROI
• better reporting of algorithmic errors
• enhances computation of 3D distance transforms with chamfer masks
• fix bug causing presence of a black color in Golden Angle LUT
• renamed morphological reconstruction plugins and plugin classes
• fix bug when finding min and max on byte processors.
• several updates to the user manual

Release v1.2.2

Major changes:

• Rename and update intensity measurement plugin.
• Fix bug with input images on former 3d measure plugin.

MorphoLibJ 1.2.1

MorphoLibJ v1.2.1

List of changes:

• several corrections added to user manual, with updated cross-references and new examples
• added DOI
• implementation of hybrid algorithm for morphological reconstruction of 3D images coded with short
• added static methods in Images3D for checking type and size consistency of two images